Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01093 ATGGAGAGGAACGAAAATTACAGTTCAGAGGAGGAATGCATGGAGGATTACAGGCGTGGAGGGTACCATGCCGTTCGAATCGGCGATGCTTTCAACAACGGCCGCTACGTCGTGCAGTCCAAGCTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCATTTCGCGTTTTGTAGCCCTTAAAATTCAAAAGAGTGCCCAACATTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATAGCCGAGGGGGACCTGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTCAAGCATTCGGGGCCTAATGGACAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATTAAATATACTGACTATCGTGGGGTTCCACTCCATATGGTTAAAGAAATCTGTTTTCATATATTGGTGGGCTTAGATTACTTGCATCGTGAGCTTTCTGTTATACACACTGATTTGAAGCCAGAAAATGTGTTGCTTCAGTCACTGATAAATCCATCCAAAGATCCTAGGAAATCAGGTGCTTCACTCATCCTTCCGAATACCAAGGATAAGGCTGCGTCTAATAATGGGACTCACCAAGACAATAAAATTTTGAATGGAGATCCACTGAAGAACCAGAAAAAGAAAGTGAAGAGGAAGGCTAAGGTAGCTCAAGGCTTTGTTAGGACGGAAACTTCAGAGGAAGCTGAGGATTATAAAGGACCCGAGCAAGAAGATTGTGGCAATGATGTAAAATCAAGTGTAGAATCTGTTGAAGATAAACCTGATAGTTCTCTGAGTAAAGATGAATCAACAAAGAATTTTGAAAAGGATGGTTCACAAGGAAGTCATAGTCATATGAGTAGCAGCCGTTTGATGAAAAAGAAATTGCTAGCAGCCGTTGATCTTAGGTGCAAGCTGGTTGATTTTGGAAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCCAAATACTCAACCCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGACCATCTGGCATTGATGATGGAGCTTGTTGGGAAGATGCCTCCGAAGATTGCACTAGGGGGACGCTATTCTCGAGAATTTTTCAATACACATGGTGACTTGAGGCACATAAGCAATTTGAGATTCTGGCCAATGGATAAGGTGCTGATGGACAAGTATAATTTCAGTGAGCAAGACACAAAGGACATGGTTGACTTCCTTGTTCCAATACTTGATTTCGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGTCTTAGTCATCCGTGGTTGAATGCAGGTCCCCGTACTCTTCAGCCCTCAATAACATCCGCTCAACCTGATGCCGTCAATGAGGAGTTGTCTGAAAGAAGGAAAAGGGAAGCTGCTGAAAAAGAGTCAGTGGAAATTGGTTTGAGAAATATAGCCATTAAAGGAACTTCTGAGCCTCTCAAAGACTCCCAATCTGTAAAATCATCCAAACAGATATAA 1620 0.4265 MERNENYSSEEECMEDYRRGGYHAVRIGDAFNNGRYVVQSKLGWGHFSTVWLAWDTLISRFVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYTDYRGVPLHMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLQSLINPSKDPRKSGASLILPNTKDKAASNNGTHQDNKILNGDPLKNQKKKVKRKAKVAQGFVRTETSEEAEDYKGPEQEDCGNDVKSSVESVEDKPDSSLSKDESTKNFEKDGSQGSHSHMSSSRLMKKKLLAAVDLRCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELVGKMPPKIALGGRYSREFFNTHGDLRHISNLRFWPMDKVLMDKYNFSEQDTKDMVDFLVPILDFVPEKRPTAAQCLSHPWLNAGPRTLQPSITSAQPDAVNEELSERRKREAAEKESVEIGLRNIAIKGTSEPLKDSQSVKSSKQI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01093 539 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Vian5g01093 539 Pfam Protein kinase domain 311 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01093 539 Pfam Protein kinase domain 36 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01093 539 SUPERFAMILY Protein kinase-like (PK-like) 31 484 IPR011009 -
Vian5g01093 539 Gene3D Transferase(Phosphotransferase) domain 1 119 475 - -
Vian5g01093 539 MobiDBLite consensus disorder prediction 184 298 - -
Vian5g01093 539 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Vian5g01093 539 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 7 498 - -
Vian5g01093 539 MobiDBLite consensus disorder prediction 494 509 - -
Vian5g01093 539 ProSiteProfiles Protein kinase domain profile. 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01093 539 MobiDBLite consensus disorder prediction 197 216 - -
Vian5g01093 539 SMART serkin_6 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01093 539 CDD STKc_SRPK 25 474 - -
Vian5g01093 539 FunFam CMGC/SRPK protein kinase 22 121 - -
Vian5g01093 539 MobiDBLite consensus disorder prediction 480 509 - -
Vian5g01093 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Vian5g01093 539 FunFam Serine/threonine-protein kinase SRPK-like protein 304 474 - -
Vian5g01093 539 MobiDBLite consensus disorder prediction 240 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01093 Vian-Chr5 32868692 32872480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01093 6 539 EF-hand Containing Proteins AT5G22840 62.454 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vian5g01093 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01093 K08832 - gmx:100790060 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00534 11 5366749 5370005 Vian5g01093 5 32868692 32872480 PCT