Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01087 ATGGAAGCGCCCGTAGCGAGACCGAGGGGGCGTCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAACGAAGCAAAGAAACTGGCGTCCATGGGGACACGACCTCCTGTGGCTTTGTTAGGAAGGTTCGTTTTGAAAAATTTTCCCAGGAATGGAGTGTTCCTGGGAAAAGTAGTGTACTATGAAAGCGGTCTTTATAGAGTTTGTTACGAGGATGGCGATTCAGAAGACCTTGACAGTGGCGAGGTCCGCTCTATACTAGTAAAAGAGGGTGGAATTAATGGTGATTTGGCGGGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATGGAGGAAAGATCGGAATTGGTTCACAGAAGGGACCAGTTGAATCCATTAAGGAGGAATCTAAGGCCGGAGTGTGTGAATTGAACGATGGTGGATTGATGATTGAAAAAGATGAGGAGGATGATGATGAGGATGTCAATTCTTTGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTTCTGAGGCTGAGACCCTGCCACCACCACCTGAGTTGCCGGTGTCATCAGGTACCATTGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGATCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACGAATTCACTATTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGGCAGCACCTTGAATTCCGCTCATCAGAGGGCTCAGAGCGAGCATCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTCCTTATACAATATTTGGTAGTCAGTGGACGCACATATTCTCATGAGTGGAAAACATTTTACCAAGAGGTGTCCACTGTGGAATATTATGTACTGCCGGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACATTCGGAGAGAATCAGAGGTTGGGATTGATGATGATGGAGAAGATATCCTTCCTACAGAAGTTGGGCTTAGAAGAGTCGAGCCAAGATACACCTTTACTTCAGCGTCTGAGGATAAAGAAGCTACAAAGCTTGTTTCCGCTTCAAATGCTGTGAACCAACCTGGAAGCGTTATTTCATATTCCAGAGGTACAGAAAGCACTGAAGATGGTGATGTAGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTTGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGCGAACATCTACTTGTGCTGAATATTGGCAATGCTGAATCCTGTCTTAGGTACTACAATCAGAATGACATCCCCAAGGTTCTCCAAGTGCTTTATGCATCCTTGCAGTACAGACCAATATACCATGATATTTGCATGGCAGTGCTTCAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATATAAAGGAAGAGACTAAGCCTTCTCCTTTTTTACTTCCTCCTGTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCATTAACCTCTGCTAGTACAGCTTACTGTGACAATTTGGTGCCATCTCTTGATGCTTCATCAGTTTCCACCCCAAGTTCTGCTCTTCAGTGTAATGGAAATGGTAGCAGTAGTGAGTACCCTGTTGTGACTACAAAGCTTCCTGAGAGCAGTAGGATCGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTCATCATTCCAACATCAAGCATGGAAATTTTGATGGTAGGCCAACAGAGGTAGATCCTGGCAAGTGCTCTTCAGTACATGGTCAATTTAGTTATTATGGCCATGCAAACCATACAGGGTTTCCCATAAATATTTCTTTCCAAACCAAAGAAAACACTCAAGCCAGTTTTGAAAAGTGTGAACGCAATGTAACCAATGGTTTTGCCTACATGGGTTTCTCCTATAAGCCTTTTTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCGGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTAACTGCCTCACGATTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGAAGGCAATGGCGTACGCGAGTGGAACAGGCCTCAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTCGGTCAATTTCTTTCTGTGGGGACTGGGTTAAGCTGATGGATGACTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCCACTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGACGAAGCTACAACTGAGGGTCGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCTATCTTGCCAAAATCCATGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACCGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACACTAAACTGGTAGAGGGGAAAAATTGTTATGGGATAGTTTTTGGGAGTCAGAAACATCTTCCTTCTCGGGTGATGAAAAATGTTTTTGAAATAGAGCAAGATCCAAAAGGAAAGGAGAAGTATTGGTTTTCTGAAGCACGAATTCCTTTATATTTGGTGAAAGAGTATGAAGAAGGTTATTGTCATGAGGGTTGTTCCACAAGTCAAATAGTCTCTGCAAACGAAGTTGAGTACTTGACCACGTGCAACCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAAAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGAACAGTTTTGAAGAGATCAAGGCCTAGAACTCTTGATCAAGTACCGAAATCTTCCAAAACAAAGGCTAATAATCCCATGAAACAAGTTACTTCTGCGACGAGTTTGAAAAAAACAAAGGCTAAACGTTCTGAACAAGAACCAACTACTGGGATAAATGATAATCATCTTGACATGCAACAAGTTGCTTCTGTGGAAACTTCAGCTGCAAAACGCCATCGCAAAAATTGTTCTTGGGGCATTATATGGAAAAAGAAACATAATGAAGATTCAGACGATTTCATGCTCAGGAACATACTTTTAAAAGGGAGCTCAAACATACCAGGACTAAAACCTGTTTGTCACTTGTGTCGCAAGCCATATACGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTGAGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCCAAGAAACAAGAGGGCAAAAGGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTCTGAAGCTGCTACTCCCGTCTTTCCTGTATATGATGATACTCCCACCTATTCTGCGGAGGATCCTAGTTATGTCTTTCCTGATGAGGATCCTACTCCCGTCTTTCCTGTTGAGGATGATCCTCTTTTTTTCTCTCTCACAAGTGTTGAACTGGTAACAGAACCCAAGATAGAAGGAGATATGGAGTGGAATGGTGTCTCTGTGCCAGGGCTTCAGAAACTACCAGTGAGAAGGAATGTTAAGAACGAGGGTGATGATGTTTCTTTTGAAGGTGGTGTACCTTTGGATGCTGAATTCTCTACATACGATGGTGAGACGGGTAATCTGTCCAATCCTGCGGAGGAATCTATACCTTTAGAATACACCTCTGGTGTTGACTTAGACAACAAGCTGCCGAATGACTCTGAAAATGTAAATTACGATGATTACATGGATTTCGAACCCCATACCTACTTCTCTGTAACAGAATTGTTGCAGTCAGATGATGGTGGTCAGTTTGAGGGTGTTGACATGTCTGAGGACTTGTCAGGATATATGGAAAATTCTAGCACCACCACCCTTATTCCTGAATCGTGCGATGCTAGTTTGGCCGATAAATCAGCACCTACGACTTACACCGGCCATAGTTGTATGCAATGTTCACAAATGGAACCAGCCCCTGATCTCTGTTGCGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCACCTTGGGTTGAATTACCATCGCTTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATATGGTAATAACTGA 4623 0.4307 MEAPVARPRGRPRKRRRNDEENENEAKKLASMGTRPPVALLGRFVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRSILVKEGGINGDLAGRKEKLEELVSKNGGKIGIGSQKGPVESIKEESKAGVCELNDGGLMIEKDEEDDDEDVNSLSDSGTGLGMDSGSEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRQHLEFRSSEGSERASRCLRCNEWSLLDPVTWPVFLIQYLVVSGRTYSHEWKTFYQEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNIRRESEVGIDDDGEDILPTEVGLRRVEPRYTFTSASEDKEATKLVSASNAVNQPGSVISYSRGTESTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMLGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGNAESCLRYYNQNDIPKVLQVLYASLQYRPIYHDICMAVLQYWSVPESLLFHSVSSGANVNSANIKEETKPSPFLLPPVGEGNLMKEEYPLTSASTAYCDNLVPSLDASSVSTPSSALQCNGNGSSSEYPVVTTKLPESSRIESILSADSASVSVSHHSNIKHGNFDGRPTEVDPGKCSSVHGQFSYYGHANHTGFPINISFQTKENTQASFEKCERNVTNGFAYMGFSYKPFSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERRQWRTRVEQASTFSAIKPLLLELEENIRSISFCGDWVKLMDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSAIDEATTEGRPENFVWWRGGKFTKFIFQKAILPKSMVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKNCYGIVFGSQKHLPSRVMKNVFEIEQDPKGKEKYWFSEARIPLYLVKEYEEGYCHEGCSTSQIVSANEVEYLTTCNQCYHARLLAQKENSNESPTSPLLLRGRENNSGTVLKRSRPRTLDQVPKSSKTKANNPMKQVTSATSLKKTKAKRSEQEPTTGINDNHLDMQQVASVETSAAKRHRKNCSWGIIWKKKHNEDSDDFMLRNILLKGSSNIPGLKPVCHLCRKPYTSDLMYICCETCQNWYHAEAVELEESKLSSVLSFKCCKCRRIKSPVCPYSDLKPKKQEGKRSRTKAKKEHSGADTDSGAISDMRESEAATPVFPVYDDTPTYSAEDPSYVFPDEDPTPVFPVEDDPLFFSLTSVELVTEPKIEGDMEWNGVSVPGLQKLPVRRNVKNEGDDVSFEGGVPLDAEFSTYDGETGNLSNPAEESIPLEYTSGVDLDNKLPNDSENVNYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSEDLSGYMENSSTTTLIPESCDASLADKSAPTTYTGHSCMQCSQMEPAPDLCCEICGILIHSQCSPWVELPSLGSWRCGHCREYGNN 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01087 1540 ProSitePatterns Zinc finger PHD-type signature. 421 462 IPR019786 -
Vian5g01087 1540 CDD Tudor_AtPTM-like 41 88 IPR047365 -
Vian5g01087 1540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 468 IPR013083 -
Vian5g01087 1540 ProSiteProfiles Zinc finger PHD-type profile. 418 465 IPR019787 -
Vian5g01087 1540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1184 1243 IPR013083 -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 14 28 - -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 1058 1083 - -
Vian5g01087 1540 PANTHER PHD FINGER FAMILY PROTEIN 37 1503 - -
Vian5g01087 1540 SMART PHD_3 1491 1535 IPR001965 -
Vian5g01087 1540 SMART PHD_3 1189 1237 IPR001965 -
Vian5g01087 1540 SMART PHD_3 420 463 IPR001965 -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 1092 1113 - -
Vian5g01087 1540 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Vian5g01087 1540 Pfam DDT domain 196 252 IPR018501 -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 1058 1134 - -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 1 31 - -
Vian5g01087 1540 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 341 IPR028942 -
Vian5g01087 1540 CDD PHD2_CHD_II 421 462 - -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 1250 1281 - -
Vian5g01087 1540 SUPERFAMILY FYVE/PHD zinc finger 391 464 IPR011011 -
Vian5g01087 1540 SMART testlast3 195 255 IPR018501 -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 1250 1272 - -
Vian5g01087 1540 Pfam PHD-finger 421 463 IPR019787 -
Vian5g01087 1540 MobiDBLite consensus disorder prediction 147 188 - -
Vian5g01087 1540 SUPERFAMILY FYVE/PHD zinc finger 1188 1243 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01087 Vian-Chr5 32794171 32806670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01087 285 554 EF-hand Containing Proteins AT5G22760 48.727 5.83e-73 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vian5g01087 DDT 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01087 - - gmx:100808261 1834.69