Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01086 ATGGAACAACACAATCTTTCAGACACTGATCAGTTTTTGACTCTGGGCGCCACATCGGACGAGTCACAGAGTCCTAAGGAAGCAGCGCCGTATGTCAGCGCCGCCGACAATAACAACAATGCTGTTAGCGCAGTTAACGTTGCAACTGGTCCTGGTTCTGGTTCGGAGCTGGTTGTGGCCGTAGCAAACTCCGATGCTGTAGGTTCGGGATTGGTGGTGAAGCGAGGAAGGGGTAGGCCTCGGAAGAGCGAGGATGTCGGGAGCACGGCGTCTCCGTTGATGGCGGTGGTGCCGCCGCCGCTGCCAGGTCTTTCCGATCAGACCAAGAGAGCAAGGGGACGCCCTCGTGGCTCTGGGAAACTGCAGGTTATAGCTTCCATTGGTGGGTTTCTGGCAGAAACAGCAGGGCGAAGCTTCATACCTCATGTTCTGACTGTGCAAATTGGAGAGAATTTGGTTGAAACGATAATGTCATTTTTTGAGAAAGGCCCGCTATCGGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAATGTGACCATTCGTGAACATGCTGGTTCCAATCATATTACGAGATTTGAGGGTACCTTTGAGATACTGTCATTATCAGGAGCTTGTACCTTCGTTGGTGGTATTAATGGTCCAGTTCGTACAGGTGGATCGTTGAGCATTTCAATGGCTAGATCTGATGGAAATGTTTTGGGGGGAATTCTTGAGAGTGCATTGGTAGCAGCTTGCCCTATTCAGGTTTCCGTCTCTTGTGTGCATCAGCTTGTAATGGCCACTTTCAAGCAAAACATCAACAGTCAGTTCAAGAGGAAACAATTGTTAGAATTTTCGAATGGCCCCCTTATGCTGGAAAGTCCAGATTCAGAAAGAGGTAAAATGAAAGTTCCAAAGTTGACAGAAGGAGAGAGAAGTTGTTCTTCACAACCAACAGAACTTGTTCGAACAACAGAACCTAGTTGTGTAGCGGATAGTGTGTTTTCTGCCACACCAAATGGAGTAGCAGGTAGTGCTACTAATATGCACTCTGCATGTGTTATTGGTGTTGATATGGACAACCAGGCACCGCAGTCTGCATCAGATGATTCAGATCAGAAGACTTCTGCAGAAGTGAATGCAAATGTTATAGAGTTATGA 1143 0.4733 MEQHNLSDTDQFLTLGATSDESQSPKEAAPYVSAADNNNNAVSAVNVATGPGSGSELVVAVANSDAVGSGLVVKRGRGRPRKSEDVGSTASPLMAVVPPPLPGLSDQTKRARGRPRGSGKLQVIASIGGFLAETAGRSFIPHVLTVQIGENLVETIMSFFEKGPLSVCILSATGAISNVTIREHAGSNHITRFEGTFEILSLSGACTFVGGINGPVRTGGSLSISMARSDGNVLGGILESALVAACPIQVSVSCVHQLVMATFKQNINSQFKRKQLLEFSNGPLMLESPDSERGKMKVPKLTEGERSCSSQPTELVRTTEPSCVADSVFSATPNGVAGSATNMHSACVIGVDMDNQAPQSASDDSDQKTSAEVNANVIEL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01086 380 MobiDBLite consensus disorder prediction 1 37 - -
Vian5g01086 380 MobiDBLite consensus disorder prediction 355 374 - -
Vian5g01086 380 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 253 IPR005175 -
Vian5g01086 380 Gene3D - 141 276 - -
Vian5g01086 380 MobiDBLite consensus disorder prediction 75 117 - -
Vian5g01086 380 SMART AT_hook_2 74 86 IPR017956 GO:0003677
Vian5g01086 380 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Vian5g01086 380 ProSiteProfiles PPC domain profile profile. 136 277 IPR005175 -
Vian5g01086 380 MobiDBLite consensus disorder prediction 355 380 - -
Vian5g01086 380 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g01086 380 MobiDBLite consensus disorder prediction 285 314 - -
Vian5g01086 380 CDD DUF296 141 244 IPR005175 -
Vian5g01086 380 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 260 - -
Vian5g01086 380 PRINTS AT-hook-like domain signature 74 84 IPR017956 GO:0003677
Vian5g01086 380 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Vian5g01086 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 295 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01086 Vian-Chr5 32765594 32768609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01086 73 250 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 40.217 1.55e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01086 - - gsj:114378162 402.134