Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01082 ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAAATGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTATATACACATTTCTCAGGTTGCCCTTGGAGAGGCGAAAAAGGAAAAGGCAAATGAACCTGTGGTTGTGTACTTGAAAGTTGGTGATCAGAAGATTGTTTTGGGAACCCTTAAAAAGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTTTCGCACTCTTCGAAAAGTGCCAGTGTATTTTTTTGTGGATACAAAGTTCTGACGGACGACGGTAACATTTCTGACTTTTCTGATAGTGAAGAAGAGGAGGAGGCTCTTCCCTTGAAAGGTCAAGATAATGGGAAGCCTGTAACAAAAGCTGAAGGAGCAAAGGTTACCAAGCCCTCTAAACCTGCTTCCGTGAAAGGTGCATCTGTAAAACAAATAAAGACTGTTGATCCAAAGAAAGAGGATGATTCTGATTCTGACGAATCTGACGATGAGCTTGCTGGTAATGATGAATCTGATTCTGACGAGATGGATGATGGTAGCGATAGTGATGAGGAGAGTGAAAGTGAGGAAGAGACCCCTGCGAAGAAGGGAAAGAAGAGACAAAATGAGTCTGCCTCAAAAACTCCAATCTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAGAAGACTGATGGTAAAAAAAGTGTACATGTAGCAACTCCCTATCCTATGAAGAAAGGTGGAAAGACTCCCAAAAACGTCACAAAAGTGCAGTCTCCCACTTCTGCTGGACAACTATCTTGTGGATCTTGTAAAAGGAATTTTGCCAACGAAGATGGGTTGCAACAACATAAGAAGGCCAAGCATGGTGGTCAGTGA 894 0.4329 MDSPMEFWGVEVKVGQNVKVDPMDPVSAYIHISQVALGEAKKEKANEPVVVYLKVGDQKIVLGTLKKDDIPHLSLDLVLDSDSELSHSSKSASVFFCGYKVLTDDGNISDFSDSEEEEEALPLKGQDNGKPVTKAEGAKVTKPSKPASVKGASVKQIKTVDPKKEDDSDSDESDDELAGNDESDSDEMDDGSDSDEESESEEETPAKKGKKRQNESASKTPISSKKAKTATPEKTDGKKSVHVATPYPMKKGGKTPKNVTKVQSPTSAGQLSCGSCKRNFANEDGLQQHKKAKHGGQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01082 297 MobiDBLite consensus disorder prediction 110 278 - -
Vian5g01082 297 MobiDBLite consensus disorder prediction 167 200 - -
Vian5g01082 297 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Vian5g01082 297 FunFam Histone deacetylase HDT1 5 105 - -
Vian5g01082 297 Gene3D Nucleoplasmin core domain 2 107 - -
Vian5g01082 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Vian5g01082 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Vian5g01082 297 MobiDBLite consensus disorder prediction 201 215 - -
Vian5g01082 297 MobiDBLite consensus disorder prediction 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01082 Vian-Chr5 32687534 32689918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01082 5 117 C2H2 Transcription Factor Family AT5G03740 46.018 2.29e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g01082 NPL 1.2e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01082 - - gmx:547649 359.762