Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01073 ATGGACGCAGAGGATCTAGCCGACGACCTTCACAGTCTCAGCTTCGCTTCCACCACCACCACTACCAAACGCAGCACAAGTTTCAGCTCAGAAACAACCACCGTCACGCCCTCCACCTCCTCCCACTTCCTTCACGCGCCAATCCCGAACGCCAAGCCTCACGCGCCCTCCTCCGACCCCTGCGCCTCTTTCATCCACCGCACGAGGCCCCTCGCCCTCTCGCACCTCCGCTTCACGCGCCGCCTCGGCTCCGGCGACATGAGCGCCGTCTATTTGGCGGAGCCCAAAGAAGAAGGTGGCGGCGCCGTGTTCGCGGCTAAGGTGATGGAGAAGGAGGACTTGGCGAGGAGGAACAAGGAAGGCAGAGCGAAGACAGAAAGGGAAATTCTCGAAATGTTGGACCACCCTTTCTTGCCCACGCTGTACGCGTCCATCCACGCGCCCAAATGGCTCTGCTTCCTAACGCCCTTCTGTCCCGGCGGTGACTTGCACGTCCTCCGCCAGCGGTTCCCCAACAAACGCTTCCTCGAATCCGCCGTCAGGCCACTACATTTGAAAATGGTAGAAAGCTTTCAGCCAAAACGCAAGCGAAAGAAGAAGCAGAAGCTCCGTAGCGGGCCTGCGTTCGTGGCGGAGCCCATGAACGTTCGGTCGATGTCATTCGTCGGGACCCACGAGTACTTGGCACCGGAGATCGTGTCCGGTGAGGGCCACGGTAGTCCGGTGGACTGGTGGACTTTGGGGATATTTATGTTCGAACTGTTTTACGGCGTGACACCGTTCAAGGGCATGGACCACGAGCTGACCCTGGCGAACATCGTGGCTCGAGCCCTTGAGTTCCCGAAGGAACCGGCGTGTTCGGGCGCCATGAAAGACCTTATATCGCAGCTGCTGGTTAAGGACCCCGGCAAGCGGCTAGGGTCCCTGATGGGTGCTTCTGCGATCAAGCAACACTCTTTTTTTGACGGCGTTAATTGGGCGTTGCTGAGGTGTACCACTCCACCCTTTCTTCCCTCACCTAATGCTAAAGCTGTATATGATGATGATCATCACACTTCACCTGACATTTTCGTTGATTCTTATTAA 1086 0.5737 MDAEDLADDLHSLSFASTTTTTKRSTSFSSETTTVTPSTSSHFLHAPIPNAKPHAPSSDPCASFIHRTRPLALSHLRFTRRLGSGDMSAVYLAEPKEEGGGAVFAAKVMEKEDLARRNKEGRAKTEREILEMLDHPFLPTLYASIHAPKWLCFLTPFCPGGDLHVLRQRFPNKRFLESAVRPLHLKMVESFQPKRKRKKKQKLRSGPAFVAEPMNVRSMSFVGTHEYLAPEIVSGEGHGSPVDWWTLGIFMFELFYGVTPFKGMDHELTLANIVARALEFPKEPACSGAMKDLISQLLVKDPGKRLGSLMGASAIKQHSFFDGVNWALLRCTTPPFLPSPNAKAVYDDDHHTSPDIFVDSY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01073 361 ProSiteProfiles AGC-kinase C-terminal domain profile. 322 361 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian5g01073 361 PANTHER FLIPPASE KINASE 1-RELATED 189 343 - -
Vian5g01073 361 FunFam serine/threonine-protein kinase D6PK-like 216 339 - -
Vian5g01073 361 SUPERFAMILY Protein kinase-like (PK-like) 73 348 IPR011009 -
Vian5g01073 361 Gene3D Transferase(Phosphotransferase) domain 1 216 339 - -
Vian5g01073 361 ProSiteProfiles Protein kinase domain profile. 76 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01073 361 ProSitePatterns Protein kinases ATP-binding region signature. 82 107 IPR017441 GO:0005524
Vian5g01073 361 Pfam Protein kinase domain 218 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01073 361 Pfam Protein kinase domain 79 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01073 361 FunFam serine/threonine-protein kinase D6PKL2 75 161 - -
Vian5g01073 361 MobiDBLite consensus disorder prediction 21 60 - -
Vian5g01073 361 Gene3D Phosphorylase Kinase; domain 1 71 205 - -
Vian5g01073 361 MobiDBLite consensus disorder prediction 21 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01073 Vian-Chr5 32508288 32511295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01073 188 361 AGC Kinase Gene Family AT3G44610 72.159 7.82e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian5g01073 Pkinase 4.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01073 K08286 - aof:109824087 349.362