Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01067 ATGATTAATATGAACATGAAGAACAACGAATCTCCTTGTTCCAAGTCACAGTCTCCACCAAACTCTGATCCATTGTGTGATTCTTCAAATCCATCTCACAAGAGGAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGGCACCCTGTGTATAGGGGTGTACGCCAAAGAAACGGAAACAGATGGGTGTGTGAAATTAGGGAACCAGTGAAAAAGTCAAGGATCTGGGTAGGCACATACCCTTCTCCTGAAATGGCTGCTAGGGCACACGACGTGGCTGTTTTAGCCCTTAATGGCATCTCTGCTAAGTTCAATTTCCCCGATTCAGTTTCCCTTCTTCCTCTTGCAAAGTCTTCTTCTGCTGCAGATATAAGGGAAGCAGCAAAAACTGCTACTGTTGATGATACTTTCACGCCAAACACATCTTTTTCTTGTTCCTCTCATGGAAATTCTAGTTTTGAAGAAAATGGGAATGCAGAAGAGAGTTTTTTGAACACGAGCATCCACAATGATGAGTCTGAAACCGTGTTCTTTGATGAGGAGGCACTGTATAATATGCCAGGTTTGTTGGATAGTATGGCCGAGGGATTGCTAATTACTCCACCCTCTAGAGCACTGGTCTGGGACCATTCTGATTCTGAAATAGACCTTACTTTGTGGAATAACTGA 666 0.4324 MINMNMKNNESPCSKSQSPPNSDPLCDSSNPSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEIREPVKKSRIWVGTYPSPEMAARAHDVAVLALNGISAKFNFPDSVSLLPLAKSSSAADIREAAKTATVDDTFTPNTSFSCSSHGNSSFEENGNAEESFLNTSIHNDESETVFFDEEALYNMPGLLDSMAEGLLITPPSRALVWDHSDSEIDLTLWNN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01067 221 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Vian5g01067 221 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 220 IPR045277 GO:0003700
Vian5g01067 221 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vian5g01067 221 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Vian5g01067 221 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vian5g01067 221 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Vian5g01067 221 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vian5g01067 221 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vian5g01067 221 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Vian5g01067 221 MobiDBLite consensus disorder prediction 1 28 - -
Vian5g01067 221 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01067 Vian-Chr5 32426069 32426734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01067 34 220 AP2-EREBP Transcription Factor Family AT4G25490 47.938 1.46e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian5g01067 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01067 - - gmx:100793751 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01067 5 32426069 32426734 Vian5g01067 5 32426069 32426734 ECH
Vian11g00563 11 5685493 5686203 Vian5g01067 5 32426069 32426734 PCT