Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01064 ATGGCGTCAGAGAGCACAGTGACTTCAAACTCTACCGACGGTGAACGACCGAAGGTGGTTGTCATAATGGGACCCACAGCTTCCGGGAAGTCGAAGCTTGCCGTTGATTTAGCCTCTCAATTCCCCATAGAAGTCATCAACGCTGATTCCATGCAGGTCTACCGCGGCCTTGATGTTCTCGCCAACAAACTCCCTCTCTCTCACCAAAACGGTACCACAGTACCCTCGCCGCACCTGATTATTCTCCATGCCAATCCCGTTCCGTTTCTGAAATCACGTTTCGAATTTGCTGCAGGAGTGCCGCATCATCTCTTGGGAACTGTAAGCCCCAACGAAGAATTCACGGCTAAAGCGTTTCGGGATTCCGCTATTCCCATTATTGATGACATAGTGGCTCGCAATCATTTGCCTGTTATAGTTGGGGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTCTAGATGATTCTGCCGAAGATATGGATGAAAGCTGTTTGGGTGACCCACCTGGCATCACGCAGTCTGAGAACAGTTTCCCTGCTGAAAATGATGGTTCAAGCTATGGTTATGATCTGCTCAAGGATATTGATCCAGTTGCTGCTAATAGAATCCATCCAAATAACCATAGAAAGAATTGGGGTCAAGTTGACAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGGACGATGGATTACTCAATGAAGTCTATGACATTTATAATTTGAATGCAGATTATACTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTCGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGTATGAAAGAGAGAGGGAACTGACTGAAGGATCCAGGGTAGAAAAGGGCAAGACCTTGTTTAATAGTAATTTGATGGAGTTGGTGAGATCTTCCAATGATACTGAATCCATAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAACATTGTTTGGTTGGAACATATACTACGTTGATTCCACAGAAGCAATATCGAGCAAATCAGAAAATGCATGGGCACGCCAAGTAGTTGAACCTGCTGTGAAGATAGTTAAATCTTTCTTGAGTGAGAATGGAAGCTTGTCATCCACCTTTGGGGCTTCAAATGACACAGGGATGAAAATAATGCAAAGGGACCTCTGGACACAATACGTATGCAAGGCGTGTGGAGATCGCGTTCTTAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGTGGGCACCGAAAACGTATTTCAGGTCTTAAGAGCAAGGGCCAATTTCCTGGTTTCGTGGAACAGAAGGTTGAGTATTCTCAGTGTGAACAGTGA 1443 0.4449 MASESTVTSNSTDGERPKVVVIMGPTASGKSKLAVDLASQFPIEVINADSMQVYRGLDVLANKLPLSHQNGTTVPSPHLIILHANPVPFLKSRFEFAAGVPHHLLGTVSPNEEFTAKAFRDSAIPIIDDIVARNHLPVIVGGTNYYIQALVSPFLLDDSAEDMDESCLGDPPGITQSENSFPAENDGSSYGYDLLKDIDPVAANRIHPNNHRKNWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMDDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVKDMYERERELTEGSRVEKGKTLFNSNLMELVRSSNDTESIILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWNIYYVDSTEAISSKSENAWARQVVEPAVKIVKSFLSENGSLSSTFGASNDTGMKIMQRDLWTQYVCKACGDRVLRGLHEWEQHRQGRGHRKRISGLKSKGQFPGFVEQKVEYSQCEQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01064 480 Hamap tRNA dimethylallyltransferase [miaA]. 19 375 IPR018022 GO:0008033
Vian5g01064 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 264 IPR027417 -
Vian5g01064 480 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 72 IPR039657 -
Vian5g01064 480 Gene3D - 173 214 - -
Vian5g01064 480 Pfam IPP transferase 52 352 - -
Vian5g01064 480 Gene3D - 17 422 IPR027417 -
Vian5g01064 480 FunFam tRNA dimethylallyltransferase 422 465 - -
Vian5g01064 480 Gene3D Classic Zinc Finger 423 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01064 Vian-Chr5 32376067 32382686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01064 22 474 C2H2 Transcription Factor Family AT2G27760 50.104 6.09e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01064 K00791 - gmx:100792690 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01064 5 32376067 32382686 Vian5g01064 5 32376067 32382686 ECH