Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01060 ATGAGCGGGGATGGTCGACGACGTGACCGGAGAGATACCAGAGCACCGAAAAAGCGGAAGCTAAACCGCAACCCCGAGGATGAACTCGAAGCTAAATTAGGGTTCGATCTGTTTTCAGAGGGTGAAAAGCGGCTCGGATGGCTACTCACTCTTGCATCCTCATCTGTTCAGGATGAAAACAGTTACAAAGAATACAGTTGTGTCGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAATTCAGATTTCGGCCTTACTTCTATGTAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGAAGACGTTACGAAGGTCAGATTGCTGATATTGAAATTATAGACAAAGAAGACCTGGATCTTAAAAATCATTTATCAGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTACAACAATTGATGGATGTGAAGAGAGACCTGATGCCTTCTGTTGAAAGAAATAAGGCTAAGTCTGATACTGCAGAAGCCTTTGTATCCATGTCAACAGAAAGAAGAGAACATAGACCTCAGGACTTTCTAGATTGCTTGACTGATCTTCGAGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAACGGGGTTAAACTTGAAAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGAGTTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGTGTGTCGGGGATGATATAGAAGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAAGTGACAAATGTTCAAAATGAGGAATTGGGGTTCAAATGCGACACAAACCAAGGGGAATGTCGTGCTAAATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCTTGAAGGCTGTTACAAAAGCAAAGTTGGGATATGATCCAGTGGAGGTGCATCCTGAAGACATGGTTCGATTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATAAAACTTATGTTCATCCCTTTATATTCTCTCTTGCAACCATTATACCTATGCCACCCGACGAGGTTTTGCGCAAAGGTAGTGGAACCCTATGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCCAATGTTATATGCCCTAACAAACACCAGTCTGATCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACATACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGACATCCCATCTAGTTTTACATTAGAGCCATCTGCTTTTCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGCAAGATGGATTTGGAATCTGTTTCTAATTATGACGAAGTAAGAAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGTGCCAACACGTGAAGAATGTCCCCTCATTTATCACCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCATCAATTGTTACCGATGAAGTCTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGTAAGCTTGAGTGGGTTTGGCGCGGAGAAACATTCATTGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAAATAGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTTACCCCGCTATTCTGAGAAGAGGTCATCAAAATCCTTTCTTGACCTTCCCAAGTCAGAGCAAATATCAAGATTGAAAGATCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAAATTCGTGAAGCAGGAATCTGCATGCGGGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGATTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAAGAAGCACAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGGCCATACAAGGCAATGATCCTTCCTGCTTCAAAGGAAGAAGGAATTTTGATTAAGAAGCGATATGCTGTTTTTAATGATGACGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCATCATTAGAAGAATGCTATTCAGCTGTTGCTTCGGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATCGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACGGCTAAACGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGTGAGCGTGCTATTCCTGTGGCAATATTTGAAACTGATGCTGGTGTATGCTTAATGTATGCAGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAAGTTTCATTGGAAGTTGCCATTCGTTCAATAATTGATTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAGATTGTCACTATTCCTGCTGCAATGCAAAAGGTTTCAAACCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCACAAAAAAGTTCGGGAGAAGGAGGACAAATTTCGCCAACGGAAAATAGTTGATGCCTTTAAACCAATGAACAAGAACGAGCACTTGAAAAAGCTTAATGACTCAAATCGTGTCTCTCTTGTGATGGATGATGAGATTCTTAATGAGTTAGAGGACTTTGGAAACAAGGGTAGGAGTTCTACTTACGGACCTAGACCAATTATAAGGCATTATGAAGCTAATAATGAACAAAATTCGAGGAAGCTCAGTGATCAACAAGATTTAGAGCAAGAGCATAGTAAAGATAATAGCAGCAAGAAAAATCTACTTTCACCACCACAACAAGATGAAACGTATGAAAATATAGACAGAAATGTAGATTATCAGGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAAATATTCTGGAAAGAAGAAAGAAGCAAAGAGTCTTTTACCTCAATTCAAGATCTCCAATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGAATCTTCCTCATGGAAGGCTGAATTATAACTTATATGAGGTCTCAATTAGTGAAATTCAATATGGGGAAGTGAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATATTGAGGTCAGCATACGGACTAATCATCTTGTGGATAAAACTGCCAATAAACGTAGTCTGCATGAACCATGGAATTTGAGTGAATTGCACATGAAGACTACGACAGAATGTGTTTATCTTGAACAGTCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATTACCGACTTTTCTTGAACGACAATTTCATGATGCTTGCCAGGCTTTGTCTATTGACCCACCTCCGAGGAATGACATTAATTTTAAGGTGGACTATGTGGCCCATGTCAAGGATGCTGAAACAGTGATGCAAAGAGCAATAAATAGTCACAGTCACGGAAGGGAAAATCATGTGCCTATGGTTGCTGTCATTGAATGCCCTAATGTTCAATTAGTAAAATTGGGCATCCGTGCTCTAGATGATTTTCCATGCCTGAGTGTTCCTTACAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGTTGTGCTGCATCAGTCCGATGGTTAAATGAAAGAATTGCTCTCTCAAGATATGCCCATGTACCCCTGGGGAACTTTGAACTTGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGGGCGTTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGGATTAATGGCGAACAGAACTTTTTTGTTGATGAGATACACCACCTGGCTGTAAATGCTCTACTCAAGTACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCACGAACATGATTCTGGAGCATTTTCTATGAATGATCAGAATGGTTTTGATGAGTCTACCTCTTGTGCACATGCCTTTCGAGTCCTTAAGCAGTTGATCCAGCGTTGCCTAGCAGATGCAGTGACATCAGGAAATGTTTATGCTGATTCAATTTTGCAGCATCTGTACAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCATCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTATTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATTTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGCTAAGAACTATACAATCTAGGGATTTATTTGAATGGATTGAGCTTGAACCACTACAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTACGGTGGAATACCAGTAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATTATATCAAGCTGGAACATTGCTGAATACTTGCCAAAAAAAGTCCAAGACCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTTAAGGATGGTGACACCTGCACTCCATCAATAAGCATTGGAGCTGCAGCTGCTTTTGAATCAGAAATAACAGAGTATATCAAAGAACAGATTAGCTCTTACTTTGCGGACAAACTGCTGGGAATTGTTCACGATATTAGTCTTCATATGAAGGGGGTGAGCAGATCAGAAAACAACCAGAGTATATCACCAGGCCCTGAATTACACAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCTCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTGTTGAGAAAGAATTTGCTAAAATATGTTGGTGTTAGAGAGTTTGCTCCCGAAGCCGAGTTTCATGATCCTTGTCATTCATTCGTCTTATCCAACGTCATATGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGGGATTTGGCTTTATTAACTGAGGAGTGGCGTTGTGCTGTGCCACAGTGTGGGCAGCCTTATGACCGTGAGACTGTAAGACAAAGAGAACGACTATACCACCTGCAAGATGTGGTGTGTATCAAGTGCCATCAGGTGAAAGCTGCGCATTTGGCAGAACAATGCGCATGTGCAGGCTCGTTTAGTTGCAAGGAAGATGCAAATGAATTTCGTAGAAAGATGCAGAATTTTTTTAAGGATAAATTCATCATGGAAACATAG 5766 0.4043 MSGDGRRRDRRDTRAPKKRKLNRNPEDELEAKLGFDLFSEGEKRLGWLLTLASSSVQDENSYKEYSCVDLYFVTQDGSSFKSKFRFRPYFYVATKDKMEMDVEAYLRRRYEGQIADIEIIDKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPSVERNKAKSDTAEAFVSMSTERREHRPQDFLDCLTDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGVKLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMCVGDDIEDIEYTPKPEFEGCFKVTNVQNEELGFKCDTNQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVHPEDMVRFAKEKPQMMASYSVSDAVATYYLYKTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAFQQLINNLDRDLQYAITVEGKMDLESVSNYDEVRNAIMEKLVKLRDVPTREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFIAKKSDYYALKTQIESEFVDDSENNKSLPRYSEKRSSKSFLDLPKSEQISRLKDRLKKYCQKAYKRVLDKPVTEIREAGICMRENPFYVDTVRSFRDRRYEYKGLNKIWKGKLSEAKASGNSMKIQEAQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSSLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAGVCLMYAEVMKFYVRKWCKVSLEVAIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVSNPVPRVAHPDWLHKKVREKEDKFRQRKIVDAFKPMNKNEHLKKLNDSNRVSLVMDDEILNELEDFGNKGRSSTYGPRPIIRHYEANNEQNSRKLSDQQDLEQEHSKDNSSKKNLLSPPQQDETYENIDRNVDYQGWLQVKKRMWKNILERRKKQRVFYLNSRSPITEEFMGKRVNKNLPHGRLNYNLYEVSISEIQYGEVSKKLATLLADPDIEVSIRTNHLVDKTANKRSLHEPWNLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLLPTFLERQFHDACQALSIDPPPRNDINFKVDYVAHVKDAETVMQRAINSHSHGRENHVPMVAVIECPNVQLVKLGIRALDDFPCLSVPYNARDSQYQILGWQQTAGKVGMQRCAASVRWLNERIALSRYAHVPLGNFELDWLIFMADIFFSRALRDNQQVLWISDDGLPDLGGINGEQNFFVDEIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPVKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVFIVSQFMYIPWNYAQNQAQIRASFKDGDTCTPSISIGAAAAFESEITEYIKEQISSYFADKLLGIVHDISLHMKGVSRSENNQSISPGPELHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVGVREFAPEAEFHDPCHSFVLSNVICSYCNDCRDLDLCRDLALLTEEWRCAVPQCGQPYDRETVRQRERLYHLQDVVCIKCHQVKAAHLAEQCACAGSFSCKEDANEFRRKMQNFFKDKFIMET 1921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01060 1921 FunFam DNA polymerase epsilon catalytic subunit 779 970 - -
Vian5g01060 1921 Gene3D Palm domain of DNA polymerase 528 775 IPR023211 -
Vian5g01060 1921 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 300 721 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vian5g01060 1921 SMART polmehr3 239 779 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian5g01060 1921 Gene3D - 779 970 IPR042087 -
Vian5g01060 1921 MobiDBLite consensus disorder prediction 1053 1095 - -
Vian5g01060 1921 FunFam DNA polymerase epsilon catalytic subunit 298 411 - -
Vian5g01060 1921 Pfam Domain of unknown function (DUF1744) 1448 1634 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vian5g01060 1921 Pfam Domain of unknown function (DUF1744) 1286 1443 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vian5g01060 1921 SUPERFAMILY Ribonuclease H-like 63 433 IPR012337 -
Vian5g01060 1921 Gene3D DNA Polymerase, chain B, domain 1 50 232 - -
Vian5g01060 1921 Gene3D - 292 411 IPR036397 GO:0003676
Vian5g01060 1921 Pfam DNA polymerase family B, exonuclease domain 74 300 IPR006133 -
Vian5g01060 1921 SUPERFAMILY DNA/RNA polymerases 412 993 IPR043502 -
Vian5g01060 1921 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Vian5g01060 1921 MobiDBLite consensus disorder prediction 1 25 - -
Vian5g01060 1921 SMART DUF1744_2 1268 1634 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vian5g01060 1921 MobiDBLite consensus disorder prediction 1055 1079 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01060 5 723 Core DNA Replication Machinery Family AT2G27120 71.117 0.0 1114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01060 K02324 - gmx:100778115 1963.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01060 5 32318591 32354656 Vian5g01060 5 32318591 32354656 ECH