Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01050 ATGATTAACAATGGCGTCTGCACTCTCCGCACCTGCTTCCGTTTTCCGGGGAGGTCGCCATTCCCACCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAAGAAAGAGAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGAGCCTCAACGGCGAAATCGTCAGTGCAGACTCTGTCCAGGTATATCGAGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAATCTTCTTCAGTGATTGCATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGAGACCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGACTACGGCGTAGCCTAGAGATTGTTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTGCTGATGATTCTGAGTTATCTGATATAAACACGTACGGTGATGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTAACCTCTATAGATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAAGATATACCAGTGGCTTGATGGTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGGCGCATACCATGACTGGAATGGAAGTCTTCCTGTGCCTGAACACTTAAGAATGTCGAGAGATATTTCTAATCGCCGAGAAGAAAAACATCTAAAGACTTACCGCACCAGAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTTAATTGGATAAAGTTTCCAGCTGAACTTGGAAGTTTAAGTTCTTTCCATCCTTTCACTTGTGAACCTATGTGTGCGAGAGAAGAATAA 1407 0.435 MINNGVCTLRTCFRFPGRSPFPPLQRSFTFRRRFLVTASQRKKKEKVIVISGPTGSGKSRLALELAKSLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSSSVIASEVNQELAELQRNEDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIVKSSGSPPSAFRVPYDSFREQGECSVADDSELSDINTYGDGMEETSSSELDYEFMCFFLSSHRLNLYRSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASRNFAKRQLTWFRNEKIYQWLDGSKPLETILSFINGAYHDWNGSLPVPEHLRMSRDISNRREEKHLKTYRTRNRHFVKGEDCSHILNWIKFPAELGSLSSFHPFTCEPMCAREE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01050 468 Gene3D - 44 436 IPR027417 -
Vian5g01050 468 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
Vian5g01050 468 Gene3D - 156 226 - -
Vian5g01050 468 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Vian5g01050 468 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Vian5g01050 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 353 IPR027417 -
Vian5g01050 468 Pfam IPP transferase 80 369 - -
Vian5g01050 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Vian5g01050 468 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 374 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01050 Vian-Chr5 32151969 32160236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01050 50 224 C2H2 Transcription Factor Family AT2G27760 29.508 4.27e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01050 K00791 - gmx:100808814 796.193