Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01049 ATGGATCCAGCCCAAAGCCTGAGTGAAGCAAAAGCAGCAACCATCCACCATTACAGTAAAAGCTTTCAAGGCTTCTCAGCTATGATTACACCTGAGCAAGCCACTCAACTAGCAGGAATCTGGCCGGAATCGCAAAGCTTCACTGATTATGGATTAGGTCCCGTGCCCAAAAAATTCAAAGGAGAGTGTGTCGCTGGTGATAAGTTTACACTAGCCAATTGCAACAAGAAAACCATCGGTGCTCGATTCTATTCAAAAGGGTTTGAAGCAGAAAATGGTCCTCTAGACGGTGTTGTCAATAAGATATTTTTCCGCTTCTGCAAGAACAATACTCTAAATCCTACCTTAATCAAGGGTAAAATTGTGATCTGTACAATCGAGAATTTCAGTGATAACAGACAAGATAAGGCCATAGAAATAAGGAAAGGTGGGGGTGTTGGAATGATACTTATTGATCATAATGCCAAAGATGTTGGTTTTCAATTTGTCATCCCAAGCACTCTCATTGCATGGTCTCCAGTAGGAACTGATGCCACAGTTGAACAACGACCTGTCAACTACAACATCATTTCAGGAACATCAATGTCTTGTCCACACATAACTGCAGTTGCAGCAATTATTAAATCTCACCACCCATCTTGGGGTCCTGCAGCCATAATGTCTTCAATAATGACAACAGCAACAGTTACTGATAACACACAGCACCTCATAAGAAGAGAACCAAATGGAACTCAAACCACACCATTTGACTATGGATCTGGACATGTTAACCCAGTCGCATCACTGAATCCGGGATTAGTATATGAATTTAATTCCCAAGATGTTCTGAATTTTCTGTGCAGCAATGGAGCAAGCCCAGCACAAGTTAAAAACCTCACTGGGGATCTTACTCAATGCCAAAAACCTCTTAAAGCTTCCTATAACTTCAACTATCCTTCCATTGGAGTGTCCAACTTGAATGGAAGTTTATCAGTTTATCGTACAGTTACTTACTATGGTCAGGAGCCAACAGTTTATTCTGCAAGTATTGAAAATCCATCTGGTGTGAAGGTTATAGTTACTCCAGCAGAATTGAAGTTCTGGAAAACTGGGGAGAAGATAACTTTCAGGATTAATATCTTCCCTTTCAAAACAAGCAACGGAAACTTTGTGTTTGGCTCCTTGACATGGAATAATGGAAAACAAAGGGTTAGGAGTCCTATTGGTGTCAATGTACTCTCTACTTAA 1227 0.4067 MDPAQSLSEAKAATIHHYSKSFQGFSAMITPEQATQLAGIWPESQSFTDYGLGPVPKKFKGECVAGDKFTLANCNKKTIGARFYSKGFEAENGPLDGVVNKIFFRFCKNNTLNPTLIKGKIVICTIENFSDNRQDKAIEIRKGGGVGMILIDHNAKDVGFQFVIPSTLIAWSPVGTDATVEQRPVNYNIISGTSMSCPHITAVAAIIKSHHPSWGPAAIMSSIMTTATVTDNTQHLIRREPNGTQTTPFDYGSGHVNPVASLNPGLVYEFNSQDVLNFLCSNGASPAQVKNLTGDLTQCQKPLKASYNFNYPSIGVSNLNGSLSVYRTVTYYGQEPTVYSASIENPSGVKVIVTPAELKFWKTGEKITFRINIFPFKTSNGNFVFGSLTWNNGKQRVRSPIGVNVLST 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01049 408 Pfam Subtilase family 183 234 IPR000209 GO:0006508|GO:0008236
Vian5g01049 408 ProSiteProfiles Serine proteases, subtilase domain profile. 1 262 - -
Vian5g01049 408 SUPERFAMILY Subtilisin-like 179 263 IPR036852 GO:0004252|GO:0006508
Vian5g01049 408 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 3 49 IPR037045 -
Vian5g01049 408 ProSitePatterns Serine proteases, subtilase family, serine active site. 192 202 IPR023828 -
Vian5g01049 408 Gene3D - 279 406 - -
Vian5g01049 408 Gene3D - 56 170 - -
Vian5g01049 408 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 39 94 IPR045051 -
Vian5g01049 408 Pfam Fibronectin type-III domain 308 403 IPR041469 -
Vian5g01049 408 Gene3D Peptidase S8/S53 domain 171 274 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01049 Vian-Chr5 32144466 32148607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01049 39 96 Subtilisin-like Serine Gene Family AT2G04160 50.000 2.51e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01049 - - pvu:PHAVU_011G092600g 458.373