Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01048 ATGATAGCAAGATCCTTGACGAATCCCCAAAAGGAAAGAAAATCACAGAACAAGAAGAAAAATAAGATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGGAGGAAGACAACAAAGGTAATTACGCGAGAGCGTTCCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACGGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCAGCGGCCCACCTTCCTCCGGGGATGCTGCCGTCGCTACCAGGCCCAAGACCAAGCCCAAGGACGGCGCGGGCGGCGACGGGGAGGATCCTGAACAGACCAAGCTCCGGGCTGGGCTCAACTCTGCCATCGTTAGAGAAAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGCTGGAGAGCGCCAAACAGGCTCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTTTTCACCGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCACCGGGGACGGGTAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCTACGTTCTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTTGAAATGGCTCGTGAAAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGCGAGGGTAATGAGAGTGAGGCTTCAAGACGAATTAAAACTGAAGTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTGGTTCTAGCGGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGCCAGCACATGTTCAAGGTGCACCTTGGAGATACTCCCCATAGTTTGACAGAAAGTGATTTTGAACATTTGGCCCGCAGGACAGAGGGGTTTTCAGGTTCAGATATAGCTGTCTGTGTCAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGCATGTGGATTCCATGTGGACCAAAGCAACAGAGTGCAATACAAATTACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCACAGATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGGCCGACCTCAATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1368 0.4832 MIARSLTNPQKERKSQNKKKNKMYSNFKEQAIEYVKQAVEEDNKGNYARAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKPKDGAGGDGEDPEQTKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEVLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFEHLARRTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQSAIQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLNVHERFTKEFGEEG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01048 455 PANTHER AAA DOMAIN-CONTAINING 39 453 - -
Vian5g01048 455 MobiDBLite consensus disorder prediction 118 132 - -
Vian5g01048 455 Gene3D - 147 443 IPR027417 -
Vian5g01048 455 Pfam ATPase family associated with various cellular activities (AAA) 189 318 IPR003959 GO:0005524|GO:0016887
Vian5g01048 455 CDD RecA-like_VPS4 146 316 - -
Vian5g01048 455 Pfam Vps4 C terminal oligomerisation domain 388 452 IPR015415 -
Vian5g01048 455 Pfam MIT (microtubule interacting and transport) domain 29 92 IPR007330 -
Vian5g01048 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 450 IPR027417 -
Vian5g01048 455 FunFam vacuolar protein sorting-associated protein 4A 320 435 - -
Vian5g01048 455 Gene3D - 28 97 - -
Vian5g01048 455 SMART AAA_5 184 320 IPR003593 GO:0016887
Vian5g01048 455 MobiDBLite consensus disorder prediction 1 24 - -
Vian5g01048 455 FunFam Vacuolar protein sorting-associated protein 4 147 327 - -
Vian5g01048 455 ProSitePatterns AAA-protein family signature. 290 309 IPR003960 GO:0005524|GO:0016887
Vian5g01048 455 SMART smart 24 101 IPR007330 -
Vian5g01048 455 FunFam Suppressor of K+ transport growth defect 1 28 97 - -
Vian5g01048 455 SUPERFAMILY MIT domain 24 105 IPR036181 -
Vian5g01048 455 Gene3D - 320 435 - -
Vian5g01048 455 MobiDBLite consensus disorder prediction 93 132 - -
Vian5g01048 455 CDD MIT_VPS4 26 98 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01048 Vian-Chr5 32135535 32142762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01048 183 376 Calmodulin-binding Proteins AT3G56690 36.735 4.10e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01048 5 32135535 32142762 Vian5g01048 5 32135535 32142762 ECH