Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01043 ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCTAAATTCCAACACAATATCTACTTCTTCTTCTTCTTCTTCTTCATCTTTTTTTTCTTCTTTTTCCTTCACCCAGCATGACCTTGTTCATGAAACCATCCAATTCTTGCCCATTGAGGCCTCAAAAGATGAAGCCCACCATCAAAGTTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTCACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTTGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGCTTCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTTAACCAAGAGAGAAGGTTCTGGATTCCAACCCCAGCTCAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCACTACAAAAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCACTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGCTCAATGCTCATCATCATGCATGA 969 0.4376 MECNVENNKNLYLHAPTFIEWLKPCSSPSYLNSNTISTSSSSSSSSFFSSFSFTQHDLVHETIQFLPIEASKDEAHHQSFEVKEEKLEQVTVALHIGLPDSAKRHHEVVDDDDEKMIFHVKEEEASSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDELNAHHHA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01043 322 Gene3D Classic Zinc Finger 156 179 - -
Vian5g01043 322 SUPERFAMILY beta-beta-alpha zinc fingers 148 180 IPR036236 -
Vian5g01043 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 261 IPR013087 -
Vian5g01043 322 SMART c2h2final6 241 261 IPR013087 -
Vian5g01043 322 SMART c2h2final6 157 179 IPR013087 -
Vian5g01043 322 SMART c2h2final6 204 236 IPR013087 -
Vian5g01043 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Vian5g01043 322 FunFam Zinc finger protein WIP2 210 292 - -
Vian5g01043 322 SUPERFAMILY beta-beta-alpha zinc fingers 226 261 IPR036236 -
Vian5g01043 322 PANTHER ZINC FINGER PROTEIN WIP2 18 312 IPR043584 GO:0003700|GO:0010468
Vian5g01043 322 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Vian5g01043 322 Gene3D Classic Zinc Finger 218 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01043 Vian-Chr5 32087174 32089793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01043 4 309 C2H2 Transcription Factor Family AT1G08290 56.047 3.22e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g01043 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01043 - - gmx:100802773 585.104