Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01039 ATGGCGGGCCAAAGATTGGGAGAAACGGGTCTATCTGAGTCAGGACCTTCAAGTCATCATGTCCCTTATGGAGTTCTTCATGGGATTAATACCTCAGCATCAGGCCTAATGAATCAAGGGTCTGGTTTTGATTTTGGAGAGCTGGAAGAGGCTTTTGCTCCATTGCAAGGCATCAAGATAAGAAGTGATGAAGCCAAATCATCAGCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCACCAAACCCCAAGAGGAGGTTCAAAGTCGGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCCATAAGCATAAAAGCATCTTCTTCAGATCATCAACAGGCTTTTGATCAGCTTCAACAACAACAACAACAGGAGACAGCAACTGATGGCTCAAGGGCAGGGACATCACAGACTCAATCACAACAAGAAAAGAGGAAAGGAGCTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAAGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGAGTGTTTATGGGTTGTGGTGGTGCTGGTGGAAGTATATTAAGTTCTGGAGCTGCAATGTTTGACCTGGAGTATGCAAGATGGTTAGAAGATGACCACCGGCACATGGCGGAGCTCCGGACCGGGCTGCAGGCACCACTGTCCGACGGCGAGCTGAGGGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTGAAGGGAGTGGCTGCTAAAACAGATGTGTTTCATCTCATCAATGGCATGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTCAAACCATCAGAACTCATCACAATGTTGATACAACAGTTGGAGCCCCTAGCTGAGCAGCAAATTATGGGCATATGTGCTCTCCGTCATTCTTCAGTGCAAGCAGAAGACGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTCGTTGACACCATCGCCGGTGGCTCCGTCGCCGATGGAGTGCAACAGATGGTGGCCGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTGTTGGCCAGGCTGATAATCTGAGACAACAAACCCTTCATCAGTTATGTCGATTACTGACAGTTCGACAAGCTGCAAGATGTTTTGTTGTGATTGGAGAGTATTATGGTCGTTTAAGAGCCCTAAGTTCTCTTTGGGCATCAAGACCTAGAGAGAGCATGATCAGTGATGATAATTCATGCCAAACAACCACAGCACTGCAGATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1464 0.4699 MAGQRLGETGLSESGPSSHHVPYGVLHGINTSASGLMNQGSGFDFGELEEAFAPLQGIKIRSDEAKSSALFTGRPSATLEMFPSWPMRFHQTPRGGSKSGGESTDSGSGVNTLSSKNELQFETESPISIKASSSDHQQAFDQLQQQQQQETATDGSRAGTSQTQSQQEKRKGAGSTSEKPLDAKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCGGAGGSILSSGAAMFDLEYARWLEDDHRHMAELRTGLQAPLSDGELRVIVDGYLSHYDEVFRLKGVAAKTDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLEPLAEQQIMGICALRHSSVQAEDALTQGLEQLQQSLVDTIAGGSVADGVQQMVAAMGKLANLEGFVGQADNLRQQTLHQLCRLLTVRQAARCFVVIGEYYGRLRALSSLWASRPRESMISDDNSCQTTTALQMVQPSQNHFSNF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01039 487 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Vian5g01039 487 Gene3D - 183 231 - -
Vian5g01039 487 Coils Coil 210 230 - -
Vian5g01039 487 FunFam BZIP family transcription factor 183 232 - -
Vian5g01039 487 Pfam bZIP transcription factor 183 225 IPR004827 GO:0003700|GO:0006355
Vian5g01039 487 MobiDBLite consensus disorder prediction 82 113 - -
Vian5g01039 487 SMART brlzneu 180 257 IPR004827 GO:0003700|GO:0006355
Vian5g01039 487 PANTHER TRANSCRIPTION FACTOR TGA9 126 459 - -
Vian5g01039 487 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Vian5g01039 487 CDD bZIP_HBP1b-like 184 235 - -
Vian5g01039 487 Pfam Seed dormancy control 265 340 IPR025422 GO:0006351|GO:0043565
Vian5g01039 487 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
Vian5g01039 487 MobiDBLite consensus disorder prediction 172 186 - -
Vian5g01039 487 MobiDBLite consensus disorder prediction 96 113 - -
Vian5g01039 487 SUPERFAMILY Leucine zipper domain 184 226 IPR046347 GO:0003700|GO:0006355
Vian5g01039 487 MobiDBLite consensus disorder prediction 132 186 - -
Vian5g01039 487 MobiDBLite consensus disorder prediction 1 23 - -
Vian5g01039 487 MobiDBLite consensus disorder prediction 132 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01039 Vian-Chr5 32030044 32036755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01039 167 487 bZIP Transcription Factor Family AT1G08320 72.274 6.90e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian5g01039 DOG1 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01039 K14431 - gmx:100101904 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00582 11 5944106 5950500 Vian5g01039 5 32030044 32036755 PCT