Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01034 ATGCCAATCCCTTCTGAGAGACACATGTTCCTTCACACTGGAAATGGATCTGGTGATTCTAGTCTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGGGGAGCAGACAAGGCAACACCCAAAACAGTAATGAAACTCATGGGGATTTCAGGGCTTACTTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGTAATAACGTGACACACAAAATCTCCATAAACCCGGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAATGGAACTCATGTGAACAACTTAAACCTTGCCCCTCAGTCGAATAACAAAGATTTACACATCAGTGAGGCACTGCAGATGCAAATAGAGGTTCAAAGAAGACTAAACGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAAGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAAAATCTGGGAGTAGTAGGACTTGAAGCTGCAAAACTTCAACTTTCAGATCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAACTCAGCATTTTTAGAGCTGAAGGAGTTACAAGGATTTAGCCCTCACCAAACACAAACCAACCAGCCAAACGACTGTTCTATGGACAGTTGCCTCACATCCTGTGAGGTGTCACAGAAAGAGCAAGAGATACAAAACGGAGGGATGAGCCTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGCTCATAGAGGGTCCTAATCTCAACAACCTACCAAGCACTGACCTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTCACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGAAAGAATCAGTTAAATCAGTGGCTGAGAAAGTTTCTCAAGATTATGGACTGCCTTCGTACTTTGCTGCACCAAACCTGGACCTAACCACTGAAGACAAGAACAATAGGAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA 1131 0.4403 MPIPSERHMFLHTGNGSGDSSLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNNVTHKISINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLELKELQGFSPHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNGGMSLRPFNVHTFMERKELIEGPNLNNLPSTDLKWCDPVKNTFLTPLSRRSPSNLSMSIGLEGETENGSTIRKESVKSVAEKVSQDYGLPSYFAAPNLDLTTEDKNNRSCKELDLNGFSWN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01034 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 260 IPR044848 GO:0003700
Vian5g01034 376 Coils Coil 135 155 - -
Vian5g01034 376 Pfam MYB-CC type transfactor, LHEQLE motif 133 179 IPR025756 -
Vian5g01034 376 NCBIfam myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
Vian5g01034 376 FunFam Myb family transcription factor 28 86 - -
Vian5g01034 376 Gene3D - 28 86 - -
Vian5g01034 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
Vian5g01034 376 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Vian5g01034 376 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01034 Vian-Chr5 31963415 31965318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01034 61 376 G2-like Transcription Factor Family AT3G04030 50.000 1.18e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian5g01034 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01034 - - gmx:100805237 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00584 11 5976279 5978062 Vian5g01034 5 31963415 31965318 PCT