Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01031 ATGGGAAAAGAAATTGAAAATGGCGGGAAAAGAGGTGAACTAGATTACCCTAACCCTAAATTCATCCCAGTTCCCAATTCCTATTCGAAGAACAGAATGGCTGAGGCGGAGGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAAACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCTGTCAGCAAAGATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTGTCAGTGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTGTTCGCCCTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGTTGAAAAGAAAGCGGCAGTGTCAAGAGGAAAAGAAGATGAGCAGAGAAAGAAAAGAAAATTGGAAGCTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGATGAGTCACCTGATAGAGCGGAGGGTTCTGATAAAGGTGAGGGCGAGGAGGACGATGAATAA 555 0.4523 MGKEIENGGKRGELDYPNPKFIPVPNSYSKNRMAEAEELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLEEFRKKNVEKKAAVSRGKEDEQRKKRKLEAESSDKGEASINDESPDRAEGSDKGEGEEDDE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01031 184 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 34 178 - -
Vian5g01031 184 MobiDBLite consensus disorder prediction 131 175 - -
Vian5g01031 184 Gene3D Histone, subunit A 28 183 IPR009072 GO:0046982
Vian5g01031 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 107 IPR003958 -
Vian5g01031 184 Coils Coil 90 110 - -
Vian5g01031 184 FunFam DNA polymerase epsilon subunit 3 31 175 - -
Vian5g01031 184 Coils Coil 134 154 - -
Vian5g01031 184 SUPERFAMILY Histone-fold 39 152 IPR009072 GO:0046982
Vian5g01031 184 MobiDBLite consensus disorder prediction 131 184 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01031 39 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 28.713 3.23e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian5g01031 CBFD_NFYB_HMF 2.1e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01031 K02326 - gmx:100306382 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01031 5 31925446 31927252 Vian5g01031 5 31925446 31927252 ECH