Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01030 ATGCCTCGGGGAAAAGCAAATTCTTCATCAGCTGCTAAGCCATCTGACTCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAACAATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTAGAAGAGATAGAAGAGGAGGTAGAAGAAGAGGAGGAGGACCCAGAGGAGGTAGATGTAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGAGGATGCCATGCAAAACCATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGACGAGAAGAAAAAACATGCCGAACTCCTTGCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGCGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGCATTCCAGCGAGAACAAGGGATTCGGTTTTGTGACATTTAGAAGTGTGGAGTTGGCTTCTAAAGCTATTGAAGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTATGGAAGATCTGAGGAAGATTGTATCTGAGATTGGACCTGGAGTTACCGGTGTGGAACTAGTCAAGGATATGAAGAACACCAATAACAATCGTGGCTTTGCTTTTATTGACTATTATAATAATGCTTGTGCTGAGTATTCTAAGCTAAAGATGATGAGCCCAACATTTAAGCTAGGGGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCGAAGAATGTGACTCAAGAACAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCTGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGCTCTTTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGGGTCAAACACACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCACAACATGTCGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCGGGATATCCTGCTCCAGGTCTTACACAGCCCTTGCTATATGGAGGAGGTCAAGCTCCCGCCGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAACCAGGAATGCAACCACAAGCTCCATCCTCACATCATAGAGGTGGTCGGAGCGGTGGCAGTGGGGGTGGCAATAGGAATGCTGGCAGTTCTAGTAAGGGAAGGCACAATAATGATGGTGGTCAAGGGCGCAGATATCGCCCATATTAG 1530 0.4458 MPRGKANSSSAAKPSDSEKPVESDEKVDFEEENDPEETMEEEIEYEEVEEEVEVEEIEEEVEEEEEDPEEVDVEEEEEEEEEEEEEEEEIEEVDEEDAMQNHSSDEAKVEDEDEKKKHAELLALPPHGSEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHSSENKGFGFVTFRSVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGMEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMSPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQVLECSLAKPQSDQKSGGSNTQKPGPGLLPSYPQHVGYGLVGGAYGALGAGYPAPGLTQPLLYGGGQAPAGMAMMPMLLADGRIGYVLQQPGMQPQAPSSHHRGGRSGGSGGGNRNAGSSSKGRHNNDGGQGRRYRPY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01030 509 SMART rrm1_1 210 287 IPR000504 GO:0003723
Vian5g01030 509 SMART rrm1_1 304 377 IPR000504 GO:0003723
Vian5g01030 509 SMART rrm1_1 130 203 IPR000504 GO:0003723
Vian5g01030 509 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 210 290 - -
Vian5g01030 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 291 IPR000504 GO:0003723
Vian5g01030 509 SUPERFAMILY RNA-binding domain, RBD 126 294 IPR035979 GO:0003676
Vian5g01030 509 SUPERFAMILY RNA-binding domain, RBD 297 398 IPR035979 GO:0003676
Vian5g01030 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 374 IPR000504 GO:0003723
Vian5g01030 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 270 IPR000504 GO:0003723
Vian5g01030 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Vian5g01030 509 MobiDBLite consensus disorder prediction 483 497 - -
Vian5g01030 509 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 292 401 - -
Vian5g01030 509 MobiDBLite consensus disorder prediction 100 115 - -
Vian5g01030 509 Gene3D - 70 209 IPR012677 -
Vian5g01030 509 MobiDBLite consensus disorder prediction 380 401 - -
Vian5g01030 509 MobiDBLite consensus disorder prediction 1 115 - -
Vian5g01030 509 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 501 - -
Vian5g01030 509 MobiDBLite consensus disorder prediction 461 509 - -
Vian5g01030 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Vian5g01030 509 Coils Coil 38 99 - -
Vian5g01030 509 Gene3D - 290 410 IPR012677 -
Vian5g01030 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Vian5g01030 509 MobiDBLite consensus disorder prediction 380 398 - -
Vian5g01030 509 SMART rrm2_1 304 377 IPR003954 GO:0003676
Vian5g01030 509 SMART rrm2_1 130 203 IPR003954 GO:0003676
Vian5g01030 509 MobiDBLite consensus disorder prediction 27 99 - -
Vian5g01030 509 Gene3D - 210 289 IPR012677 -
Vian5g01030 509 CDD RRM_SF 131 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01030 Vian-Chr5 31919982 31924223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01030 131 466 Eukaryotic Initiation Factors Gene Family AT4G34110 25.067 1.27e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01030 K13161 - gmx:100806658 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01030 5 31919982 31924223 Vian5g01030 5 31919982 31924223 ECH