Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01019 ATGATGAGTGAGATGGAAATAGAGAGATACACCAGTCAGCGGTGGCGTCCTACCGATGATCAGATCAAGATAATGACCAACATATACAATTATGGGGTCACACATCCAAGCAGAGCTCAAGTTGTCGAGATTGCATCTCGACTAAGGGCTTTCGGAGATGCCAGCGAATATAACGTGCACTGCTGGTTCAACAACCATGGCAATCGGGTCAGGCGCCTGCAAGCGGAGATAGACCCCACTGGCACTAGCTTTTCTTGTCTGCCGCGATACATGTATGAATTTTTTTTGTTGAAAGAATATGACTGGGTAGTTATCAAGGCACCGAGGCTGCTGGATCTGTTCCCCATTCCGATCATCATCGACGACGACAGAGATGAACGACAAATCCCTCCACCTATGCCTCCTGCATTCCGTACCAGAGCTCCCTCGACGGAGCTTACCCTAAGATCTCCACCCAGCAACCATTTTCAATTTTAA 477 0.4822 MMSEMEIERYTSQRWRPTDDQIKIMTNIYNYGVTHPSRAQVVEIASRLRAFGDASEYNVHCWFNNHGNRVRRLQAEIDPTGTSFSCLPRYMYEFFLLKEYDWVVIKAPRLLDLFPIPIIIDDDRDERQIPPPMPPAFRTRAPSTELTLRSPPSNHFQF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01019 158 Pfam Homeodomain 12 72 IPR001356 GO:0003677
Vian5g01019 158 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Vian5g01019 158 MobiDBLite consensus disorder prediction 132 158 - -
Vian5g01019 158 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 72 IPR044555 GO:0003700|GO:0099402
Vian5g01019 158 Gene3D - 12 77 - -
Vian5g01019 158 ProSiteProfiles 'Homeobox' domain profile. 8 73 IPR001356 GO:0003677
Vian5g01019 158 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01019 Vian-Chr5 31789390 31789932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01019 1 76 Wox Gene Family AT5G59340 40.789 1.55e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian5g01019 Homeodomain 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01019 - K19475 vum:124821070 231.876