Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01017 ATGCCAAACATCATGGAAGATCATCCACCTGGTTTTCGCTTCTTCCCGACAGAAGAAGAGCTTGTTGGCTTCTACCTACGCAACAAGCTAGAAGCTTCAAGAAATAATGCTGCTGCTGTTACTGCTGCCATAGATAGAGTTATTCCAGTTGTTGATATCAATGCCCTGGAACCATGGAACCTCCCAACACTTGCGGGGGAGCTTTGCCGTGGGGATACAGAGCAATGGTTTTTCTTTTCGCCTGGGCAAGAGAGAGAAGCCAGAGGAGGGAGACCTAGCAGAACCACAACTTCTGGGTACTGGAAAGCTACTGGTTCACCTGGCTATGTTTATTCTTCTGATAACAGAGTCATTGGGGTGAAGAAATCCATGGTGTTCTACAAAGGAAAAGCTCCTATGGGAAGAAAAACCAAATGGAAGATGAACGAGTACAGAGCCATCTCCAACCCTGTCACCCCTCAGTTGAGATGCGAGTTCAGCTTATATCGGGTGTATATCGTATCTGGAAGCTTTCGAGCATTTGATCGCCGTCCATCAGAGGCAGAAGGAGCAGAGTCACGTCTTCATCAAAGTTCATCTCAAGTTTCTCACTTGCTCCAACTTTCTCAGCTTTCTGAGCTTTCTCAGCTCCCAGAAGCTGGAGATTCAAGTAGCAGAAATTGGAACGAGGAACAGCTTCAAGAACCGTCATGGGAATTGGAATGGGAACACTTCAATTGGTTCTAA 726 0.4642 MPNIMEDHPPGFRFFPTEEELVGFYLRNKLEASRNNAAAVTAAIDRVIPVVDINALEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTTSGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAISNPVTPQLRCEFSLYRVYIVSGSFRAFDRRPSEAEGAESRLHQSSSQVSHLLQLSQLSELSQLPEAGDSSSRNWNEEQLQEPSWELEWEHFNWF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01017 241 ProSiteProfiles NAC domain profile. 8 167 IPR003441 GO:0003677|GO:0006355
Vian5g01017 241 SUPERFAMILY NAC domain 5 165 IPR036093 GO:0003677|GO:0006355
Vian5g01017 241 Gene3D NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Vian5g01017 241 Pfam No apical meristem (NAM) protein 9 145 IPR003441 GO:0003677|GO:0006355
Vian5g01017 241 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01017 Vian-Chr5 31700106 31701027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01017 6 240 NAC Transcription Factor Family AT3G44350 53.036 1.28e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g01017 NAM 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01017 - - gmx:100781321 347.051