Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00988 ATGTCGGCACCGCACGCTCCTTCCGCTGCCGCCACCGCCACCGCCACAGCCTCCTCCAACCCGCCCGATCAGATCATGCACACCATGAAACGCCAACTCCCCTTCTCTTCCATGAAACCACCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGAAGCCTCGACGCCGAAGCAGTCGTGGTCAAGACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGGAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAGGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA 1395 0.4595 MSAPHAPSAAATATATASSNPPDQIMHTMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVPKLPSSPDVNKNQSTVVPEDKGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRDNTSTPSHPSNVGEVSSTSKPSGG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00988 464 Gene3D - 219 329 - -
Vian5g00988 464 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Vian5g00988 464 SUPERFAMILY E2F-DP heterodimerization region 226 329 IPR037241 -
Vian5g00988 464 MobiDBLite consensus disorder prediction 74 118 - -
Vian5g00988 464 MobiDBLite consensus disorder prediction 1 27 - -
Vian5g00988 464 Coils Coil 225 266 - -
Vian5g00988 464 Gene3D - 141 214 IPR036388 -
Vian5g00988 464 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Vian5g00988 464 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Vian5g00988 464 Coils Coil 163 183 - -
Vian5g00988 464 MobiDBLite consensus disorder prediction 437 464 - -
Vian5g00988 464 CDD E2F_DD 223 329 IPR032198 GO:0046983
Vian5g00988 464 MobiDBLite consensus disorder prediction 345 381 - -
Vian5g00988 464 MobiDBLite consensus disorder prediction 7 26 - -
Vian5g00988 464 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Vian5g00988 464 MobiDBLite consensus disorder prediction 90 118 - -
Vian5g00988 464 PANTHER TRANSCRIPTION FACTOR E2F 90 429 IPR015633 GO:0000978|GO:0006357
Vian5g00988 464 FunFam E2F transcription factor 1 141 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00988 Vian-Chr5 31350497 31355777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00988 30 463 E2F-DP Transcription Factor Family AT5G22220 57.415 1.36e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vian5g00988 E2F_CC-MB 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00988 K06620 - gmx:100819817 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00988 5 31350497 31355777 Vian5g00988 5 31350497 31355777 ECH