Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00975 ATGGCGACGTACTTTCATGGTAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCAAGCGCAAAACATGCTCCTCGTCAATCCCAATAACGCTAGTAACACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCTCCCACGCGCCTCCACCGCCATCTCCCAACAACCACCGTGACCAACAACACAACCACCACCACCACCACCTGATTGGGCTTACCATTCCCTCGTCAAACATCATCGGATCCAATACCGCCGCCGGAGATCACGCTCGCCCATCGTTCCTTGGACAACATGAATTCTCCGGCTTTCACGGCGGTGCTACTGCGGCAACAACAGCGTCAACTTCTCGTTCTAACTATAACTTATGGGGTTCCATATTCGATCAATCTGCTTCGAATATGGTGACAACAACAAACACCCCATCTGAAAATATAGGGTGTGTTGCTTCCGCTGTCAATCCATCGACCCAGATTGGTTTCCATAGGCCGAATCATTTGTCGCTAAGCCTTTCTTCACAGCAAACACCTTACAGGTCTTTATCCGGGGACGTTCATGCTATATCACCGGCGAGCCTCGGCGGCGATGATATGAGGGGTTTGCAGAGCGGGGTTTCTAACATGCATAGTGTTGTTTTGGGTTCCAAGTATTTGAAATCAACACAGGAGCTTCTTGACGAAGTTGTGAATGTGGGGAGGGGAATCTCGAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGTGAAGGTTCGAGCTGTGGAGGAGAGAACAATGATGGAGGGAAACAAGGAGGTGAGCTCGGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTAACATCATTTGAACAGGCTGCGGGTGTTGGAGCGGCAAAGTCTTATACATCCCTTGCGTTAAGGACAATCTCAAAGCAATTTCGGTGTCTGAAAGATGCTATCTCTTCGCAAATCAAGACAGCCAGCAAGACCTTGGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGTTCAAGACTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCGCTGCAGCAACTAGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCGAAACAAACAGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAGGTGAAGCAAGAACCGAACAATGGCTCCCAAGACAATACCACAAATAGATCAAAAGAAAACAACAAGGAGTTATGGTCAGAAGCTAATGCTGCTACACAAGAATCTGGTGGCATGAGACTTAATCCAATCAATGTTCTCCAATCAAAGGCAGAAAGTTTCAACAATAACCAGACCACTTCCCCAACAGAGATCTCCAATTCTAATTCACTCTCAACATCTCCAATGGGAGGTGGAGGAGGAGAAGGAGGAGGAGGAAGAGGGTCTCTCCAATCTGGTTTCCATCTTGGGGACATGCAAAGTCCAAACAAACCAAGAAGCACTTCTGAAATGCAAAACTCTCCTGGTAGTATCCTTTCAGTGGACATGGAAATGAAGCCTCATCATGGAGAGACAAACACCAGAGAAGGAACCAACATAAAGTTTGGCATTGAAAACCATGGAGGGGGTTTTGGAGCATTTCCCATGGAAGATATTGGAAGGTTCCATCATGTCACTGAACAGCTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACCCTCTCGGGAACTCAGCATGGATTCCTCTCTCCGAATATGCACCTGGGAATGAGAACAACCAATGAAAATGAGTTCTGTGGTGCCATCAACACGCCACCTTCTTCTCATTCAGCCACCAGTTATGATAACATCGACATCCAAAACAGAAAGAGGTTCGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2232 0.4763 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHQAQNMLLVNPNNASNTSPTSANALNLGNFSHAPPPPSPNNHRDQQHNHHHHHLIGLTIPSSNIIGSNTAAGDHARPSFLGQHEFSGFHGGATAATTASTSRSNYNLWGSIFDQSASNMVTTTNTPSENIGCVASAVNPSTQIGFHRPNHLSLSLSSQQTPYRSLSGDVHAISPASLGGDDMRGLQSGVSNMHSVVLGSKYLKSTQELLDEVVNVGRGISKGEESMEGAKKEKMKGNIESTSGVGEGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTSLALRTISKQFRCLKDAISSQIKTASKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNTTNRSKENNKELWSEANAATQESGGMRLNPINVLQSKAESFNNNQTTSPTEISNSNSLSTSPMGGGGGEGGGGRGSLQSGFHLGDMQSPNKPRSTSEMQNSPGSILSVDMEMKPHHGETNTREGTNIKFGIENHGGGFGAFPMEDIGRFHHVTEQLAPRFHGNGVSLTLGLPHSENLTLSGTQHGFLSPNMHLGMRTTNENEFCGAINTPPSSHSATSYDNIDIQNRKRFAAQLLRDFVA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00975 743 Coils Coil 306 326 - -
Vian5g00975 743 MobiDBLite consensus disorder prediction 545 604 - -
Vian5g00975 743 SMART prehox3 227 374 IPR006563 -
Vian5g00975 743 MobiDBLite consensus disorder prediction 278 292 - -
Vian5g00975 743 ProSiteProfiles 'Homeobox' domain profile. 419 482 IPR001356 GO:0003677
Vian5g00975 743 MobiDBLite consensus disorder prediction 260 300 - -
Vian5g00975 743 Pfam Homeobox KN domain 439 478 IPR008422 GO:0003677|GO:0006355
Vian5g00975 743 Gene3D - 425 504 - -
Vian5g00975 743 CDD homeodomain 422 483 IPR001356 GO:0003677
Vian5g00975 743 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 506 - -
Vian5g00975 743 SMART HOX_1 422 486 IPR001356 GO:0003677
Vian5g00975 743 MobiDBLite consensus disorder prediction 491 513 - -
Vian5g00975 743 FunFam BEL1-like homeodomain protein 9 425 487 - -
Vian5g00975 743 Pfam Associated with HOX 232 373 IPR006563 -
Vian5g00975 743 MobiDBLite consensus disorder prediction 584 604 - -
Vian5g00975 743 MobiDBLite consensus disorder prediction 260 274 - -
Vian5g00975 743 MobiDBLite consensus disorder prediction 47 88 - -
Vian5g00975 743 MobiDBLite consensus disorder prediction 47 65 - -
Vian5g00975 743 MobiDBLite consensus disorder prediction 545 566 - -
Vian5g00975 743 SUPERFAMILY Homeodomain-like 423 488 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00975 Vian-Chr5 31115912 31119455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00975 1 743 Homeobox Transcription Factor Family AT2G35940 41.288 4.38e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian5g00975 POX 7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00975 - - gmx:100786883 1114.75