Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00973 ATGGAAGATCCTGTGACTACTGTGACAGGGATTACATATGACAGAGAAAGCATAGAAGAGTGGTTGCGCAAGGCCAACGATTGTGTGTGTCCTGTTAGCAAACAACCACTTCCAAGAAGCTCTCAATACTTAACCCCTAACCACACACTTCGGAGGCTTATCCAAGCTTGGTGTTCGGAAAACACTGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTTGAGGCTCCTCATTCTTTTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCTACACAAAGCCAGAGGAACAGAACCTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGGTCAAACTGATTAACAACAGTTTCAAAGATGGAAACACAAACGCCAGTTCCGTTGAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAACCACAGCAGCATGAAATCTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCGTTGACTTGGGTTTTGAAGGTTCATTTGGATGACAGCAACAGAAACGTGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATCGAGGTTGCTGATTCAACCCTTTTGGGAAATTTAAGCTTTGAATTCTTCAAGGAAATGGTGAGAGTATTGAAGAAAATAGAACTATCTCAGAAAACTATCAAATCTGCTTTGCATGTGCTTGTACAAACCAGCGTTTTGGGTAGAAACAGAACGAGGATTGTTGAGGCGGGTGCAGTGACAGAACTCATAGAGCTTGAGCTTGAGAAGCCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTGTTGTGCTGACGGGAGAGAACAGTTTCTTAGACATGCTGCGGGCATTGCAGTTGTTTCAAAGAGGGTTTTAAGGGTTTCTGCTGCCACTGATGAGAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAACGAGGTTGTTCTAGAGATGCTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGGTGCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGATTGCACTCCAAAGTTTGGAACAATTCTCCTTGTATACAACTGTATTTGTTTACTAGGCACCAAAGGTGA 1179 0.4368 MEDPVTTVTGITYDRESIEEWLRKANDCVCPVSKQPLPRSSQYLTPNHTLRRLIQAWCSENTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSFGTSLEKLHALATQSQRNRTCMAEAGVAKAMVKLINNSFKDGNTNASSVEEALRIVHLLWNNHSSMKSLVGESLDFINSLTWVLKVHLDDSNRNVVNEAMPLLKLTIEVADSTLLGNLSFEFFKEMVRVLKKIELSQKTIKSALHVLVQTSVLGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLAHLCCCADGREQFLRHAAGIAVVSKRVLRVSAATDERAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCGAYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00973 392 Gene3D - 91 374 IPR011989 -
Vian5g00973 392 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Vian5g00973 392 PANTHER WDSAM1 PROTEIN 1 383 IPR045185 GO:0061630
Vian5g00973 392 SUPERFAMILY ARM repeat 99 356 IPR016024 -
Vian5g00973 392 Pfam U-box domain 1 61 IPR003613 GO:0004842|GO:0016567
Vian5g00973 392 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Vian5g00973 392 SUPERFAMILY RING/U-box 1 67 - -
Vian5g00973 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00973 Vian-Chr5 31090071 31091249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00973 1 389 U-box Gene Family AT3G11840 40.092 2.80e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00973 - - gmx:100787426 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00629 11 6480195 6481899 Vian5g00973 5 31090071 31091249 PCT