Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00972 ATGGAGGTTCCTGCTCTTTTCCTCTGTCCAGTTTCATTGCAGCTTATGAGAGACCCCGTGACAGTGTGCACAGGAATCACATATGACAGACAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCGACGTTTGATCCAAGCTTGGTGCGACCACAATGCCTGCCTTGGACATGAAACCTTTTCATCTCCAAACCCAACCATTGATCAAACCGAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCAGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTCTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACCGGTATGAGTGAAGCAGCTATAAAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAACGAAGGGATTCAGTTTGTTGAGTCTTTGCTTCATGTCTTGAAGCTTGGAAAGTGCCAATCTCGAAGTTATACGATTTTTTTATTGAAGTCAGCACTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACCACAGAGCTGTTTCTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACGAGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGAGTTTTAGTCATCGTTGAGCTACTTGTTGACGTGTCTGATAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGACAAACTATGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAATTGCTGTTGTGGCAAAGAAAATTCTGAGGGTTTCACAAGTGGCAAGTGATAGAGGGGTGAAAATTTTGACCTCCATTTGTAGGTATTCAGCCACCCCAAGAGTTCTTCATGAAATGCTGCTGTTTGGAGCAGTGTCAAAGTTGTGCTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCAAAGGAGACACTCAAATTGCACTCTCTAGTCTGGAGGAGCTCCACATGCATTCCTCTTCCTTTGCTTGCATCTTATCCATGA 1191 0.4341 MEVPALFLCPVSLQLMRDPVTVCTGITYDRQNIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLRRLIQAWCDHNACLGHETFSSPNPTIDQTEIVKLLLEAKKFPEKQLKCLSRLQYIALESESNKICLESAGAIDFLASTMMINSTGMSEAAIKIMFHLNPSESQLKNLMNNEGIQFVESLLHVLKLGKCQSRSYTIFLLKSALKVASPTQLNNVTTELFLEIIRVLRDQISREASKAALKLLVELCSWGRNKIKAVESGGVLVIVELLVDVSDRRACELMLIALDKLCGCAEGRAELVNHGAGIAVVAKKILRVSQVASDRGVKILTSICRYSATPRVLHEMLLFGAVSKLCLVLQVEGCFKAKERAKETLKLHSLVWRSSTCIPLPLLASYP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00972 396 PANTHER WDSAM1 PROTEIN 2 388 IPR045185 GO:0061630
Vian5g00972 396 SUPERFAMILY RING/U-box 2 76 - -
Vian5g00972 396 ProSiteProfiles U-box domain profile. 2 78 IPR003613 GO:0004842|GO:0016567
Vian5g00972 396 SMART Ubox_2 6 71 IPR003613 GO:0004842|GO:0016567
Vian5g00972 396 CDD RING-Ubox_PUB 4 58 IPR045210 -
Vian5g00972 396 Pfam U-box domain 3 75 IPR003613 GO:0004842|GO:0016567
Vian5g00972 396 Gene3D - 83 384 IPR011989 -
Vian5g00972 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Vian5g00972 396 SUPERFAMILY ARM repeat 105 358 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00972 Vian-Chr5 31064306 31065496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00972 1 396 U-box Gene Family AT2G35930 50.498 1.89e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00972 - - gmx:100778012 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00630 11 6486854 6488737 Vian5g00972 5 31064306 31065496 PCT