Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00962 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAACAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGCGCTAATTTGCTATCAGTTAACATGGGAGCATCCCTTCAACCATTTCCTCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCCAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACAACCAAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCTTATAATCGATTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTCAAGGAAAGTTGGAGCAGGGAGAAGGAGGTGAAAAGACCAATGGATTCTACTGA 552 0.4475 MSMEMMATERVCYVHCNFCNTILAVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKQHLSFEEPSSKELGSSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSQGKLEQGEGGEKTNGFY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00962 183 Gene3D High mobility group box domain 98 155 IPR036910 -
Vian5g00962 183 MobiDBLite consensus disorder prediction 164 183 - -
Vian5g00962 183 SUPERFAMILY HMG-box 105 153 IPR036910 -
Vian5g00962 183 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Vian5g00962 183 CDD HMG-box_SF 114 150 - -
Vian5g00962 183 MobiDBLite consensus disorder prediction 57 86 - -
Vian5g00962 183 FunFam axial regulator YABBY 5-like 98 156 - -
Vian5g00962 183 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00962 Vian-Chr5 30912111 30917909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00962 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 64.894 1.95e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vian5g00962 YABBY 1e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00962 K25796 - gmx:100500026 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00649 11 6724797 6732432 Vian5g00962 5 30912111 30917909 PCT