Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian5g00960 | ATGAGTGATATAAGGAAGTGGTTTATGAAATCACATGACAAGGGCAACAATGCCGCTCCCTCCAAGCCTTCCAATCAATCCAAGCCTTCTTCGGATAAACCCCAGTCCGATAAAAATGTGGCTGGAGGTCAAGAAATCTCAGGGAGAAGGGTAACTAGCAAATATTTTAACACAAACAAGCAAAAGGTGAAAGATGAGAAAGAAACGCAGGAGTTACCTGCTAAAAGAAAGAATGTGAAGGACAGTGAAGATATACCGGAGCCTAAGAAAATTCATGAAGATGTTGGAGATGATTCTGTCTTGCCCACCAATAAAAAGAAGTTAGCTGAGACCACTCCGAAAAAAAAATTAAAGAGTGAATCAGGTAAAGGAATTCCCCAAAAATCTGCAGTTTTGGAAGAAAGTGACGAAGATGATGACAAAGATGCCGTGTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGTGGAAGGGGAGCACCTGGGCGATCAAGTGGTGGGAGAGGTAGAGGAGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGCTTGACTTTTGTGATTAGTGGAACACTGGACAGTTTGGAACGTGAAGAAGCTGAAGATTTGATTAAGCGCCATGGTGGTCGAGTCACTGGATCTGTCAGCAAGAAAACGAATTATTTGCTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAGGCCAAAGAGCTAGGAACTTCCTTCCTCACGGAGGATGGATTATTTGATATTATTCGTGCATCAAAACCTGCAAAAGCTCCTTCACAGGCAGAAAAGAAACCTGTGAATAAGGCTGTTGCAGTAGGATCCCCGTCAAAAGTTTCTCCGAAATCGCAAGTAAAGGTTCCTCTGTCTTCACGCTCACCTTCTAAGCAAGCTAAGCCAAAGGCTGCTACTACTGTTCAATCTTCTGTCATGTGGACAGAGAAATATCGACCTAAAGATCCAAAAGATGTCATAGGGAACCAGTCACTTATTGTTCAACTACGTAACTGGTTAAAAGCTTGGCATGAACAATTTTTGGACACTGGTAACAAAACAAAGGGTAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTTAATGCTAGTGATAGCCGTGGAAAAGCTGATAACAAAATTGAGAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGTCTATTGGTGCTAATATGGAACGGTCCAAGCTTACCAAATCTGTGCTAATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTTCCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTTAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAGCAGATGGCAAAGAGGTTGATGGATGTTGCAAAGTCTGAAGGGCTTCAAGTCAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGGATGGCAGTAAATCAGTTACAGTATATGAGCCTCTCTATGTCAATTATCAACTATGACGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAACCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAAACCAAGCTTGGCCGGTAAGGATGACAATGGGATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATAGACAGTGGCAGCTCTCTCAAGCTAGTTGTACAGCAACATGCATAATTCCTGCATCATTGTTGCATGGCCAAAGAGAAATACTTGAACAGGGAGAACGCAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGTAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCCAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTATTCTTAAACGACTGACTGAACCCCTACGAACCCTGCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCAATCTAATCCACTAGATGGGATCCAGCCTGCTGTTAAGTCAGCTTTGACAAAAGCCTATAAAGAGCAAAGCAGATCTCGGGTGGTTCGAGTTGCCGACCAAATCACACTTCCTGGTGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATACTTGAACCAGCCGAGGAAGGAGGCAAAAATGAAGATGACACCTTGGACGAGAGTGAAGAAGAGAACACCTCTGATACAGAAGAGTTGGAAGGCATCACCAAGGGAGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAAGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGTAATTCGAGTTCCAAGAAGGCATCGGCTGGTAGAGGTAAAGGTGCTTCCGCATCTGGGAAAAAGGTTGCTCAAGCTCCAAAAAGAAAAAGGTGA | 2835 | 0.4265 | MSDIRKWFMKSHDKGNNAAPSKPSNQSKPSSDKPQSDKNVAGGQEISGRRVTSKYFNTNKQKVKDEKETQELPAKRKNVKDSEDIPEPKKIHEDVGDDSVLPTNKKKLAETTPKKKLKSESGKGIPQKSAVLEESDEDDDKDAVSAVKSAGRGGGGRGAPGRSSGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDIIRASKPAKAPSQAEKKPVNKAVAVGSPSKVSPKSQVKVPLSSRSPSKQAKPKAATTVQSSVMWTEKYRPKDPKDVIGNQSLIVQLRNWLKAWHEQFLDTGNKTKGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADNKIEKGISGSKTNSVKELVTNESIGANMERSKLTKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKSEGLQVNEIALEELAERVNGDMRMAVNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGQSNPLDGIQPAVKSALTKAYKEQSRSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGKNEDDTLDESEEENTSDTEELEGITKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKASAGRGKGASASGKKVAQAPKRKR | 944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 1 | 197 | - | - | |
| Vian5g00960 | 944 | Pfam | ATPase family associated with various cellular activities (AAA) | 389 | 488 | IPR003959 | GO:0005524|GO:0016887 | |
| Vian5g00960 | 944 | CDD | BRCT_RFC1 | 196 | 274 | - | - | |
| Vian5g00960 | 944 | Coils | Coil | 889 | 909 | - | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 854 | 944 | - | - | |
| Vian5g00960 | 944 | SMART | BRCT_7 | 198 | 276 | IPR001357 | - | |
| Vian5g00960 | 944 | SUPERFAMILY | BRCT domain | 196 | 277 | IPR036420 | - | |
| Vian5g00960 | 944 | Pfam | Replication factor RFC1 C terminal domain | 662 | 824 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Vian5g00960 | 944 | FunFam | Replication factor C subunit 1 | 333 | 521 | - | - | |
| Vian5g00960 | 944 | Gene3D | - | 522 | 592 | - | - | |
| Vian5g00960 | 944 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 17 | 920 | - | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 891 | 923 | - | - | |
| Vian5g00960 | 944 | Gene3D | - | 333 | 521 | IPR027417 | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 59 | 122 | - | - | |
| Vian5g00960 | 944 | Gene3D | - | 594 | 703 | - | - | |
| Vian5g00960 | 944 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 333 | 582 | IPR027417 | - | |
| Vian5g00960 | 944 | FunFam | Replication factor C subunit 1 | 522 | 593 | - | - | |
| Vian5g00960 | 944 | CDD | HLD_clamp_RFC | 522 | 580 | - | - | |
| Vian5g00960 | 944 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 593 | 738 | IPR008921 | GO:0003677|GO:0006260 | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 863 | 880 | - | - | |
| Vian5g00960 | 944 | ProSiteProfiles | BRCT domain profile. | 196 | 277 | IPR001357 | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 300 | 329 | - | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 278 | 329 | - | - | |
| Vian5g00960 | 944 | FunFam | Replication factor C subunit 1 | 594 | 703 | - | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 17 | 42 | - | - | |
| Vian5g00960 | 944 | Gene3D | BRCT domain | 173 | 275 | IPR036420 | - | |
| Vian5g00960 | 944 | Pfam | BRCA1 C Terminus (BRCT) domain | 198 | 273 | IPR001357 | - | |
| Vian5g00960 | 944 | MobiDBLite | consensus disorder prediction | 180 | 194 | - | - | |
| Vian5g00960 | 944 | CDD | AAA | 386 | 485 | - | - | |
| Vian5g00960 | 944 | FunFam | Replication factor C subunit 1 | 172 | 275 | - | - | |
| Vian5g00960 | 944 | SMART | AAA_5 | 385 | 523 | IPR003593 | GO:0016887 | |
| Vian5g00960 | 944 | PIRSF | RFC1 | 1 | 166 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Vian5g00960 | 944 | PIRSF | RFC1 | 157 | 924 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian5g00960 | 1 | 904 | Core DNA Replication Machinery Family | AT5G22010 | 68.519 | 0.0 | 1135 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian5g00960 | K10754 | - | gmx:100790070 | 1526.92 |