Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00959 ATGGATTGCCGCATCTATGGCGTCACCATCCTTCTCTTCCTCCTTCCAACCATCACATTCTCTCTCCCGCAAGGCCAAATAAACTCAAACTCAATCCTCGTGGCTCTGTTGGACTCGCATTACACTGAAGTTGCTGAGCTAGTGGAAAAAGCCATGCTCCTTCAGACGCTCGAAAACACGGTAATGAAACACAACATCACAATCTTCGCACCCAGAAACGAAGCTCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTTCTCGAACCCCGCAACCTGCAGTCTCTCCAAACCCTTCTCATGTCTCACATCGTCCCCAAAAGAATCACTAAACCCGAATACCGATCCGGGTTAAGTAACCCAGCTCGGCCCACCCGACACAAAACCCTAGCCCCGAATTACCACCTCTCTCTCCAGACCGTTAATTCCACTCACTGGAACGTCGACTCTTCACGTGTCACCCACCCGGATTCCCTGACCCGACCCGACGGCGTCATCCATGGCATCGACACGCTCATCATCCCTCGCTCCGTACAAGACGACTTCAACCGCCGCCGCAACCTCATCTCCATCGCCGCCGTGAAACCCGAATCCGCTCCGGAGGTCGACCCGCGCACCCACCGCTTGAAAAAACCAGCTCCCCCGTCGCCGGCAGGCTCCCCACCTGTGCTTCCGATCTACGACGCGATGGCGCCGGGACCCTCACTGGCGCCGGCGCCGGCGCCTGGACCGGGTGGACCCCACCATCACTTCAACGGAGAGAGACAGGTGAAAGACTTCATCCAAACGCTCCTCCACTACGGTGGTTACAACGAAATGGCGGATATTCTGGTAAACTTAACGTCACTGGCGACGGAGATGGGACGGTTAGTTTCGGAGGGTTACGTTTTGACGGTGTTGGCTCCTAACGACGAAGCGATGGCGAAGTTGACGACGGACCAGCTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTATCACTTGATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTCCGTTACGACACGTTACGGTTGCCTCATAAGGTGACGGCGCAGGAGGCTGATGGCTCCGTCAAGTTCGGTCACGGCGACGGGTCCGCGTATTTGTTCGACCCGGATATTTACACGGATGGACGGATCTCCGTTCAGGGAATCGACGGAGTTCTGTTACCGCCTCAGGAGGAGGAGGCTGGGCCTGTGACCCGGGCCCAACCCGCTAAGGTCGTTGTTAAGCAAAGAAGAGGTCAAGCTTCTGAAGGGTGA 1299 0.5612 MDCRIYGVTILLFLLPTITFSLPQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMKHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKPEYRSGLSNPARPTRHKTLAPNYHLSLQTVNSTHWNVDSSRVTHPDSLTRPDGVIHGIDTLIIPRSVQDDFNRRRNLISIAAVKPESAPEVDPRTHRLKKPAPPSPAGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLLPPQEEEAGPVTRAQPAKVVVKQRRGQASEG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00959 432 ProSiteProfiles FAS1/BIgH3 domain profile. 258 386 IPR000782 -
Vian5g00959 432 SMART fasc_3 67 177 IPR000782 -
Vian5g00959 432 SMART fasc_3 299 404 IPR000782 -
Vian5g00959 432 Pfam Fasciclin domain 40 176 IPR000782 -
Vian5g00959 432 Pfam Fasciclin domain 283 403 IPR000782 -
Vian5g00959 432 FunFam Fasciclin-like arabinogalactan protein 16 253 404 - -
Vian5g00959 432 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 22 430 IPR044654 -
Vian5g00959 432 Gene3D FAS1 domain 35 179 IPR036378 -
Vian5g00959 432 MobiDBLite consensus disorder prediction 197 254 - -
Vian5g00959 432 Gene3D FAS1 domain 251 404 IPR036378 -
Vian5g00959 432 MobiDBLite consensus disorder prediction 405 432 - -
Vian5g00959 432 ProSiteProfiles FAS1/BIgH3 domain profile. 28 174 IPR000782 -
Vian5g00959 432 SUPERFAMILY FAS1 domain 237 404 IPR036378 -
Vian5g00959 432 SUPERFAMILY FAS1 domain 31 177 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00959 Vian-Chr5 30866520 30868342 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00959 - - gmx:100790599 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00650 11 6741284 6756647 Vian5g00959 5 30866520 30868342 PCT