Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00955 ATGTTCAACGGCATGATGGATCCCGATTTGATTAGAATCGCTCAGGAGCAGATGAGTCGCATGTCACCTGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAGCAGCTAAAGCATACTCGTCCAGAAGAAATGGCTGAGATTGGTGAGAAGATGGCCAATGCGTCTCCTGATGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAAGAAAGTTCAGTGAAGCTTTGAAGAAGTATACGCTTGCTAAAGAAAACATCAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGTTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATAATGAGTGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGACGCAACGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCGACTAAATGATGCTGTTTCTGATCTGAGCAAGGCGCGTGAAGTGTCCCCTGATGATGATACAGTTGCAGAGCTTTTACGGGATACCAAGGAAAAATTGACGATGGGAGGTGGTGAGCAATTGACTAGTGGAGTAGTAATCGAAGAAATAACTGAAGAAGTCGAGGATGTACCTCCTAAAAGCTCTTTGGAACAAACAGCGGTTCAAAAAAAATCTGGTGACACCTCTAAGAGTACAAGTAATGCTAACAATGGAAATTCAAAATCAGATGCAGACAGTTTAGATGCATTGAGAAAGGATCCTGAAGCTGTCAGGTCATTCCAAAACTTCATTCAAAACACAAATCCTGCCACGCTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCCCCAGATATGATCAAAACCACCTCTGATGTAATTAGTAAGATGTCACCTGATGAACTGCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCAATTTTTAAGAGGAGGTCCCCCTGATTCTTTTAACCCAGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCTGATGACCTCAAGAAGATGTTTGAAATGGCATCATCACTGAAAGGGAAAGAATCTATTCCATCAGCAGCAGCAGTAGATGAGATCCAAAGAAATGTTTATAAGTCGAACATCTCATCATCAAGTACTAGTGAAACTAGTCATTTTGGGGAATCAAGTTCTTCTAATAATGTGTTTTCAAATATGAGAAACGCTTCTCAGTCAAACTTTCCTTCCTCCAGCCCTGATCTACAAGAACAGATGAGAAACCAGATGAGAAACCAGATGAAAGATCCAGCCATGCGGCAGATGTTCACATCCATGATTAAAAATATGAGCCCAGAAATGATGGCAAATATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAGGCAGCAAAAGCTCAGAAAGCCGTCTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCAAGAAAGACAAAGAACTGGCTGCTAGGGAAGCCTGGAATGATCTTTGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1761 0.4231 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQRKFSEALKKYTLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYNECIKEGSEVLAYDATNLKALYRRGQAYKELGRLNDAVSDLSKAREVSPDDDTVAELLRDTKEKLTMGGGEQLTSGVVIEEITEEVEDVPPKSSLEQTAVQKKSGDTSKSTSNANNGNSKSDADSLDALRKDPEAVRSFQNFIQNTNPATLASLNAGQFKDVSPDMIKTTSDVISKMSPDELQKMLDMASSFQGDNQFLRGGPPDSFNPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPSAAAVDEIQRNVYKSNISSSSTSETSHFGESSSSNNVFSNMRNASQSNFPSSSPDLQEQMRNQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQKAVSSMSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAICMLILAIILHRLGFIGG 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00955 586 MobiDBLite consensus disorder prediction 432 471 - -
Vian5g00955 586 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 358 - -
Vian5g00955 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Vian5g00955 586 MobiDBLite consensus disorder prediction 246 287 - -
Vian5g00955 586 MobiDBLite consensus disorder prediction 256 285 - -
Vian5g00955 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Vian5g00955 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Vian5g00955 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Vian5g00955 586 SUPERFAMILY TPR-like 96 225 IPR011990 GO:0005515
Vian5g00955 586 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Vian5g00955 586 Gene3D Tetratricopeptide repeat domain 89 230 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00955 Vian-Chr5 30814810 30821032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00955 89 227 Calmodulin-binding Proteins AT3G25230 36.552 7.56e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00955 - - vum:124821888 1011.13