Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00948 ATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTCAATTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTAGTCCCCACAACAACATGGACACCATCCCCTTCCAAGTCAACCTTAGCTGTTCTCCAAACAATCATCACTCTCCCCCACCACCCCTCCACAACACAACCGAGATGGACTTCTTCTCCGACAACACCAACAACATCAACGACAACGTTTCTGCTTCTGCCTCTAATCATCATCATTCCACCACCCCACCTACGTTGGAATTCAAACTAAACACTGGGCTGAATCTTCTCACTACCAACACTAGCAGTGATCAATCTATGGTGGATGATGAGATATCACCCAATTCAGAAGACAGAAGAGCGGAGAATAAGCTTGCTGTTCTTCAATCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGAGACGCGCTTCATCAGGTTAACGTCAATTACGATGCACTTCAGATGCATTTCATGAATTTGATGCAGCAGAAGGGCGAGGAAGTTGAAGAACAAGAAGTGATTGGTGGAAAGTCAGAAGAGAAGAAGCAAGGAGAGAGTGGCGGGGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACTAATGCTGACACTGAAGAACCCTCTTGTTCAACAGGGGGAAGAAGTCAAGATCGATCAGGATCACCAAACGCAGAAGTGGCCTCGAAGGAATTAGGGACCAGCATGAATGAGAATGTTAATGATGAAGGGCGTGACAAGGAGAAGAAGGAATATGGTAGAGGGGTTGAAAGTGAGGATAGTCCCTCAGCTCATGCTTTTGCTGGGGATAAAGTTCCAAGGTTCAGTCCTCAAAAGAATAACGTTGAACAGGCTGAGGCAACCATGAGGAAAGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCTATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGATCGAACAGTCCTGAACACAACCTACGAAGGCAATCACAACCACCCTTTGCCACCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCATAATGAATGCAAACTTACTCACAAGAGCACTCCTCCCTTGCTCTTCAAGCATTGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACACAATCTCCAAATCCTCTACAGTTCCCAAGGCACCCAAACCAGTTACAAATTCCCCTCCAAGGTATCCCTCAGAATTTTTCAAACTCCCCAGCCTCTTTAATGCCTCAGATATTTGGACAAGCACTCTACAATCAATCAAAGTTTTCTGGTCTTCAAATGCCACATGATGCAGACCCTTCACAATTTGGAAACCACCCTCAGCAGGTACCACCACACCTTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAGCAGCACAACAACAGTAATAATACTGACAATAATGGCAACATGACAGTCAGCAACAGCACTGGCAATGGCAACATCACAACTAGCAACAACACCAACGGGAAGCAATAA 1743 0.459 MDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLSPHNNMDTIPFQVNLSCSPNNHHSPPPPLHNTTEMDFFSDNTNNINDNVSASASNHHHSTTPPTLEFKLNTGLNLLTTNTSSDQSMVDDEISPNSEDRRAENKLAVLQSELERMKRENQKLRDALHQVNVNYDALQMHFMNLMQQKGEEVEEQEVIGGKSEEKKQGESGGVLVPRQFMDLGLATNADTEEPSCSTGGRSQDRSGSPNAEVASKELGTSMNENVNDEGRDKEKKEYGRGVESEDSPSAHAFAGDKVPRFSPQKNNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLNTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSIMNANLLTRALLPCSSSIATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGIPQNFSNSPASLMPQIFGQALYNQSKFSGLQMPHDADPSQFGNHPQQVPPHLTDTVSAAIAADPNFTAALAAAITSIIGGAQQHNNSNNTDNNGNMTVSNSTGNGNITTSNNTNGKQ 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00948 580 Coils Coil 128 162 - -
Vian5g00948 580 ProSiteProfiles WRKY domain profile. 314 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian5g00948 580 Pfam WRKY DNA -binding domain 321 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian5g00948 580 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 104 558 IPR044810 GO:0003700
Vian5g00948 580 MobiDBLite consensus disorder prediction 181 199 - -
Vian5g00948 580 SMART WRKY_cls 319 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian5g00948 580 MobiDBLite consensus disorder prediction 492 514 - -
Vian5g00948 580 FunFam probable WRKY transcription factor 31 304 381 - -
Vian5g00948 580 MobiDBLite consensus disorder prediction 217 297 - -
Vian5g00948 580 Gene3D WRKY domain 304 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian5g00948 580 MobiDBLite consensus disorder prediction 181 203 - -
Vian5g00948 580 MobiDBLite consensus disorder prediction 218 253 - -
Vian5g00948 580 MobiDBLite consensus disorder prediction 109 129 - -
Vian5g00948 580 MobiDBLite consensus disorder prediction 548 580 - -
Vian5g00948 580 MobiDBLite consensus disorder prediction 72 93 - -
Vian5g00948 580 SUPERFAMILY WRKY DNA-binding domain 312 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian5g00948 580 MobiDBLite consensus disorder prediction 254 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00948 Vian-Chr5 30736068 30738553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00948 65 555 WRKY Transcription Factor Family AT1G62300 49.511 1.04e-131 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian5g00948 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00948 - - gmx:100797998 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00948 5 30736068 30738553 Vian6g01407 6 31615687 31618035 ECH
Vian5g00948 5 30736068 30738553 Vian5g00948 5 30736068 30738553 ECH
Vian11g00663 11 6927252 6929912 Vian5g00948 5 30736068 30738553 PCT