Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00947 ATGGGGCGGTGGCAAAGAGGCCACACCATTGGCCGGGGCTCATCAGCCACCGTCTCCACCGCCACCTGCTGCGCCGGTGGCGCTGTCTTTGCCGTGAAGTCCGCGGAGCTGTCTCAATCGGAGTCTTTGAAAAGGGAGCAGAACATTTTGTCCTCTGTAAGTAGTCCTTATGTGGTTGCGTACAAAGGGTGTGACGTTACGATGGAAAACAACAAGCTCTTGTTCAACCTCTTCATGGAGCACATGCCCTTTGGCACGGTTGCTCAGGCGACTCGCCGGCACGGTGGCCGGCTCGAGGAAGCGGCTATGGCACGCTACACCAGGCAAATTGTGCAGGGGCTGGAGTACTTGCATTCAAAAGAGTTGGTGCATTGTGACATCAAGGGTGCTAATATCTTAATCGGTGAAGATGGGGTGAAGATTGGAGACTTGGGGTGTGCTAAGAGTGTGGTGGATTCCGCGGTGGTGATCGGCGGCACCCCGATGTTCATGGCCCCGGAGGTGGCGCGTGGAGAGGAGCAAGGGTGTGCCAGTGACGTTTGGTCACTTGGGTGTACTGTGGTTGAAATGGCCACAGGTGATGCACCGTGGCCTAGTGTGGAAGACCCTTTTTCGGTGCTTTATCATATTGCATATTCTGGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCAAAGGATTTTTTGGAGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTGGTGAACTTTTGAAGCATCCATTTATTGGAAAATCATGTTCCAACAATAAGGAAATTTTGGAATCTAATTCAAGTTCCCCAACTAGTGTTCTTGAGCCATGCTTTTGGAGCTCTGTGGAAGAGTCAGAAAGTGTTGGCGATTTGATTAACAACCCAAGAAAGTTTGAACTTTTGGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGCTACCCTGTTGGGCACAGCATGATGATGAAAATTGGATCACGGCCAGAGGGAATGGAGGGAAAGGTTTTGGCAATGGTGGGTCAGGGACAGCTTCTGCTAGTCATGAGTTGTCTCACTAG 1068 0.5122 MGRWQRGHTIGRGSSATVSTATCCAGGAVFAVKSAELSQSESLKREQNILSSVSSPYVVAYKGCDVTMENNKLLFNLFMEHMPFGTVAQATRRHGGRLEEAAMARYTRQIVQGLEYLHSKELVHCDIKGANILIGEDGVKIGDLGCAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDVWSLGCTVVEMATGDAPWPSVEDPFSVLYHIAYSGEVPEIPCFLSEEAKDFLEKCLRRNPQERWKAGELLKHPFIGKSCSNNKEILESNSSSPTSVLEPCFWSSVEESESVGDLINNPRKFELLAAGRVRMLALSSGLPCWAQHDDENWITARGNGGKGFGNGGSGTASASHELSH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00947 355 ProSiteProfiles Protein kinase domain profile. 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00947 355 MobiDBLite consensus disorder prediction 332 355 - -
Vian5g00947 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vian5g00947 355 CDD STKc_MAPKKK 3 254 - -
Vian5g00947 355 MobiDBLite consensus disorder prediction 341 355 - -
Vian5g00947 355 Gene3D Transferase(Phosphotransferase) domain 1 1 304 - -
Vian5g00947 355 SMART serkin_6 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00947 355 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00947 355 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 287 - -
Vian5g00947 355 FunFam Mitogen-activated protein kinase kinase kinase 17 3 307 - -
Vian5g00947 355 SUPERFAMILY Protein kinase-like (PK-like) 1 297 IPR011009 -
Vian5g00947 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00947 Vian-Chr5 30705439 30706506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00947 4 334 MAP Kinase Kinase Kinase AT1G05100 47.875 4.56e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian5g00947 Pkinase 5.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00947 K20716 - gmx:100819665 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00947 5 30705439 30706506 Vian6g01410 6 31646099 31647911 ECH
Vian5g00947 5 30705439 30706506 Vian5g00947 5 30705439 30706506 ECH
Vian11g00665 11 6950448 6951635 Vian5g00947 5 30705439 30706506 PCT