Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00912 ATGGGTATGGGGAGAACACTGTTCATCTTTGTTTTGTGCTTGTGGATTCCCCTGGAAGTGGTGGGGAGGAAAGAACCTTCTTCACCTACCAGTGTGGATTCCTCTGTTTCTTCAAGACCGAAGGCTGTGAAATTTGGAGCCCTATTCCCTATGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGCAACAATGGAAGCTCTGCAATTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAACAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCTACTGACCCCACTCTTTCTTCTCTACAGTACCCATATTTTATCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATATATGTAGATGATGACAATGGCAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCGAAGAAACGTTCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTGAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCCATTGCCAAGAAGCTCGGAATGATGGGCAGTGGCTACGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTCAGAGTCACCTGACCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGACACTGATCTCAAGAAGAATCTTCTCTCCACCTTGAAAAGCCAAAGGGCCAAAGAGACTGTAAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGGGGAAACGTTTCTTTCTCTAGTGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCTTCACTTCGTACATTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTGGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGATATGGACAAGAATCTAGTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTACTGGTCTAATCATTCTGGTCTGACAGTTCTAGCTCCTGAAACTTTATATCTGAAAAAATCATCAAACACACCTTTACTGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGAGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAACAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAACAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCCGTCCCACGAAAATACATGTTATTTGGAAATGGTGTAAGGAATCCTAGCTACAACGAGCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATAGTGGATTTTACTCAACCTTTCATGCCCTCAGGGCTTGTTGTTGTTGTTCCTTTTAAAGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTCAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACCATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATTGATAGCTTGATCTCAAGTACACTACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAATATAGCTGAATCTAGAATAGTTACGCTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGACCTCAAGCTGGAGGAGTTGTGGCAGTTGTTGACGAGCTTCCTTACATTGAGCTCTTGATGTCCAGCAGTCAGTGTAAATTCAGAACTGTTGGCCGGGAGTTCACTAAGAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACCGCCATTCTTCAACTCTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAACAAAAAGGAGTGCACAACCGTAGATGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTTTCATTACCCTCATAATTTTCTTTGCCAGAATCTTCTGTCAATATAACAAATTCAGCCCAGAATCTGAGAAAACTGATGAGGAACTCCAACCAGTGAGGAGGTCTAGACGTCCAAGCAGAACTCCTAGCCTGAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAGAAAAGGAGACACAGCCAAAGCTTGGATGATCCTTCTGTTTCATCAGCCATCTAG 2808 0.4291 MGMGRTLFIFVLCLWIPLEVVGRKEPSSPTSVDSSVSSRPKAVKFGALFPMDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLATMEALQLMENDVVAVVGPLSSGTAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLPSVLDSSESPDPDTMNLLQGIVAFRHHIPDTDLKKNLLSTLKSQRAKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNVSFSSDPKLQDTNGSMLHLASLRTFDGGPQFLQTILGMNFTGVSGQIEFDMDKNLVHPAYEILNIGGSGSRRIGYWSNHSGLTVLAPETLYLKKSSNTPLLRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDNNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGVRNPSYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTLPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPQAGGVVAVVDELPYIELLMSSSQCKFRTVGREFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECTTVDVDSNKLALTSFWGLFLICGIACFITLIIFFARIFCQYNKFSPESEKTDEELQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDPSVSSAI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00912 935 Gene3D - 62 406 - -
Vian5g00912 935 Gene3D - 714 825 - -
Vian5g00912 935 Gene3D - 158 431 - -
Vian5g00912 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 882 IPR015683 -
Vian5g00912 935 MobiDBLite consensus disorder prediction 914 935 - -
Vian5g00912 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Vian5g00912 935 PIRSF IGluLR_plant 3 934 IPR017103 -
Vian5g00912 935 Gene3D - 473 590 - -
Vian5g00912 935 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Vian5g00912 935 FunFam Glutamate receptor 475 591 - -
Vian5g00912 935 FunFam Glutamate receptor 717 825 - -
Vian5g00912 935 MobiDBLite consensus disorder prediction 876 895 - -
Vian5g00912 935 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Vian5g00912 935 CDD GluR_Plant 478 821 - -
Vian5g00912 935 FunFam Glutamate receptor 591 721 - -
Vian5g00912 935 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Vian5g00912 935 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Vian5g00912 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Vian5g00912 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Vian5g00912 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vian5g00912 935 FunFam Glutamate receptor 158 324 - -
Vian5g00912 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Vian5g00912 935 Gene3D - 591 713 - -
Vian5g00912 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00912 Vian-Chr5 30165969 30170147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00912 39 788 Ion Channels AT1G05200 68.000 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00912 K05387 - gmx:100802782 1627.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00912 5 30165969 30170147 Vian5g00912 5 30165969 30170147 ECH
Vian11g00679 11 7162580 7166677 Vian5g00912 5 30165969 30170147 PCT
Vian5g00912 5 30165969 30170147 Vian11g00678 11 7153021 7157895 PCT