Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00907 ATGGCGACTCTTGATTCCGACGTGCCAATGATTCCGGCCGGCGAGGCATCGAGCAGCGCCGGACCGTCTTCCAAGAAGCCCAAGCGTTTCGAGATCAAAAAGTGGAACGCGGTCGCACTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCCATCTGCCGGAACCACATCATGGATCTATGCATCGAGTGCCAAGCCAACCAGGCCAGCGCAACTAGCGAAGAATGCACAGTGGCGTGGGTCAGAAATGTGAATTATTATGATTATGATGACCTTCAGGCTTTTGGGTACGAAGGAGGCGTTTGTAACCATGCTTTTCACTTCCACTGCATTAGTCGATGGCTCAAGACTCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGGCACTAG 408 0.5147 MATLDSDVPMIPAGEASSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWVRNVNYYDYDDLQAFGYEGGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00907 135 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g00907 135 CDD mRING-H2-C3H2C2D_RBX1 48 128 - -
Vian5g00907 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 135 IPR013083 -
Vian5g00907 135 PANTHER RING BOX 29 134 - -
Vian5g00907 135 SUPERFAMILY RING/U-box 28 132 - -
Vian5g00907 135 Pfam RING-H2 zinc finger domain 100 125 IPR024766 GO:0008270
Vian5g00907 135 FunFam E3 ubiquitin-protein ligase RBX1 17 135 - -
Vian5g00907 135 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 30 67 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00907 Vian-Chr5 30095950 30098561 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00907 K03868 - gmx:100789570 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00682 11 7218331 7220813 Vian5g00907 5 30095950 30098561 PCT