Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00902 ATGGCTGACATTGATCGCTCATCTGATAATGCTTCTGCTGATTCTAAAGAGAAATCCCTACAAACTTCGACTATGGAATTTTCTGAGGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACTGCAGAAGAGATAGAGAAGTATTGGACTTCAAGATATTCAACTAGCCAATGA 222 0.4099 MADIDRSSDNASADSKEKSLQTSTMEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSTSQ 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00902 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 25 70 - -
Vian5g00902 73 CDD SANT 26 65 IPR001005 -
Vian5g00902 73 Pfam Myb-like DNA-binding domain 24 66 IPR001005 -
Vian5g00902 73 SMART sant 23 71 IPR001005 -
Vian5g00902 73 FunFam MYB-like transcription factor 26 68 - -
Vian5g00902 73 SUPERFAMILY Homeodomain-like 26 69 IPR009057 -
Vian5g00902 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 73 IPR017930 -
Vian5g00902 73 MobiDBLite consensus disorder prediction 1 25 - -
Vian5g00902 73 ProSiteProfiles Myb-like domain profile. 27 69 IPR001005 -
Vian5g00902 73 Gene3D - 26 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00902 Vian-Chr5 30009302 30010044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00902 27 70 MYB Transcription Factor Family AT5G14750 50.000 2.00e-12 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian5g00902 Myb_DNA-binding 7.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00902 - - var:108340066 145.206