Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00900 ATGGAAATGAAGACGACAAGGAACGTACGAATTCGACAAAAAGATGAAACAGTGATTGGATCAACTGAAGCTCAATTGCAGCTTGGTTTTTATGGCAAAAGTTGTCCAAATGCTGAGAAGATTATTTTGAAATATGTTGCCGAGCGCATCCGAAATGTTCCATCTCTGGCAGCTGCTCTCATAAGACTTCACTTCCATGATTGTTTTGTCAATGGTTGTGATGGATCAGTGCTTTTGAACTCAACACCAAACAATCAAGCTGAAAAGGACTCTCTTCCAAATCTTACACTCCGAGGCTTTGGCTTCATTGACGCAATAAAGAGCCTTGTTGAAGCTGAATGCCCTGGAGTAGTCTCTTGTGCTGATATCTTGGCTTTGACTGCTAGAGACTCTGTTCATGCCATTAATGGAAATGACGAATATGTTTGTTATGCGATGGTTAACATGGGTTTGCAGGGAGGACCCTTCTGGAATGTTCCAACAGGTCGAAGGGATGGACTCATCTCTAGGGCAGCAGATCCTTTAGCTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCAACTATCACTCTTCGACAACGTTGGACTTGATGCAAACGACCTCGTATTGCTTTCTGGTGCTCACACGATCGGTGTTGCCCACTGTTCATCGATTTCAACTCGTTTATACAATTTCACTGGCAGAGGTGACACTGACCCAACTCTAGACAGTGACTATGCAACAAATATGAAGACATTGAAGTGCAAGAACATCAATGATAACACCACACTTCTTGAGATGGACCCTGGAAGTCGTGATACATTTGATCTTGGCTATTACAAACAAGTCCTTAAGAGAAGAGGCTTGTTCCATTCAGATGCTGAATTGCTCAGTAGCTCTACCACAAGGTCTATTATCACTAAGCAGCTTCAATCAACTGAAGGATTCTTTGCAGAATTTGCCAAGTCCATGGAGAAAATGGGACGAATTAATCTTAAACTTGGAACCCAAGGAGAGATAAGGAAACATTGTGCACGAGTGAATAACTAA 1032 0.4254 MEMKTTRNVRIRQKDETVIGSTEAQLQLGFYGKSCPNAEKIILKYVAERIRNVPSLAAALIRLHFHDCFVNGCDGSVLLNSTPNNQAEKDSLPNLTLRGFGFIDAIKSLVEAECPGVVSCADILALTARDSVHAINGNDEYVCYAMVNMGLQGGPFWNVPTGRRDGLISRAADPLASLPAPFHNLTVQLSLFDNVGLDANDLVLLSGAHTIGVAHCSSISTRLYNFTGRGDTDPTLDSDYATNMKTLKCKNINDNTTLLEMDPGSRDTFDLGYYKQVLKRRGLFHSDAELLSSSTTRSIITKQLQSTEGFFAEFAKSMEKMGRINLKLGTQGEIRKHCARVNN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00900 343 ProSiteProfiles Plant heme peroxidase family profile. 25 342 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 SUPERFAMILY Heme-dependent peroxidases 25 342 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 Gene3D Peroxidase, domain 2 179 321 - -
Vian5g00900 343 FunFam Peroxidase 29 181 - -
Vian5g00900 343 PANTHER PEROXIDASE 25-RELATED 28 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 153 168 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 200 212 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 Gene3D - 29 342 - -
Vian5g00900 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
Vian5g00900 343 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Vian5g00900 343 CDD secretory_peroxidase 25 341 IPR033905 GO:0004601|GO:0042744
Vian5g00900 343 Pfam Peroxidase 46 305 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian5g00900 343 FunFam Peroxidase 179 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00900 Vian-Chr5 29966264 29971887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00900 18 343 Peroxidase AT1G05260 60.550 2.58e-145 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00900 K00430 - gmx:100784922 529.25