Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00897 ATGGTTGAGCGAAAGCAGTTCAAGACGAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCCTTTGCGCATGGGAGTGCCGAGCTTCGACGATTCCCTGGCTCATTTAGTGGTAGGAGAGACTATTTAGGCAATGACTTGAGGGATAAACTTGAAAGAAGGCATTTATCTCCTCGAAGGTACTCACCAGCTCAAGATGCAAGAGGCCGCCAGAGCATCCGTGAATACAGTCCTCCAAGGTCTTTGGAGAACGAAAGTGACAGAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATCAAGCTAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACACTTGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCAGTGCTCTACAGAACCGAAAATTCCAGCTGGAGGTCTACCTTGATGAGAGTATTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCGAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTAGAGTTCACAATCATATGTCACAGTTACAAGATGAACTGAAGAGATCTCAAGTCCGACTTCAACGGTTTGGAGATCAGCTTGTCTCGGATATTTCTAAAATTGGTGCCAATGAAGAAGATTTAAGCATTGATATTGTCAGCAATGGTGAAAATACTGGTCTTCTTCCAATTGTCAAACATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTGCATATTGAACGAGATGCTTTGGAAGATTTAAAACAAGATAGATCAAAAGAGGGCCATTCGGTTGAGACAGGTAGAACTAAGAAGCGATCTCGGTGGAATACATCAGATCAATTGAATGATGAGTCTCTCAGGGGCCCAGAAAATGGAACTGAAGTTATTAGAGCTCTAGATCCTGAAGGCAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTGCCATCAACTAGCATGGCAGCTCATGTGGCTGATGAGGACGTTGATATTGAACTTTACAACGGAAATGATATCAATGAAACTGCAAATACAGAAAATGAGAATGGAGTGGCATACAAGGTGAAGGCTGCACTGCTTATGCTTCCCCCAGCTTTGATACCTCGTAGCAATTATTCACAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGCTGA 1254 0.4234 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFPGSFSGRRDYLGNDLRDKLERRHLSPRRYSPAQDARGRQSIREYSPPRSLENESDRRHRRKQGITGQSDTSGNLKASDRVQDQAKERKMLSSGSRNTLEEQLKKVDSGISALQNRKFQLEVYLDESIQEVDSLNSRIQELEAQLCEEDEECKRITSRIRKFVRVHNHMSQLQDELKRSQVRLQRFGDQLVSDISKIGANEEDLSIDIVSNGENTGLLPIVKHNVEHNDASSHRKRLHIERDALEDLKQDRSKEGHSVETGRTKKRSRWNTSDQLNDESLRGPENGTEVIRALDPEGRHKRGLKQPRIEVPSTSMAAHVADEDVDIELYNGNDINETANTENENGVAYKVKAALLMLPPALIPRSNYSQYEGNDENVDVDG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00897 417 MobiDBLite consensus disorder prediction 327 341 - -
Vian5g00897 417 MobiDBLite consensus disorder prediction 116 130 - -
Vian5g00897 417 MobiDBLite consensus disorder prediction 85 101 - -
Vian5g00897 417 Gene3D - 1 36 - -
Vian5g00897 417 MobiDBLite consensus disorder prediction 281 341 - -
Vian5g00897 417 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Vian5g00897 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 416 IPR045868 GO:0046872
Vian5g00897 417 MobiDBLite consensus disorder prediction 281 308 - -
Vian5g00897 417 Coils Coil 160 187 - -
Vian5g00897 417 Coils Coil 132 152 - -
Vian5g00897 417 MobiDBLite consensus disorder prediction 58 136 - -
Vian5g00897 417 Coils Coil 205 225 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian5g00897 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00897 - - gmx:100811131 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00897 5 29906862 29916779 Vian5g00897 5 29906862 29916779 ECH