LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00877	ATGAAGTTGAAAAATATAATGGAATTGACAAGACCCAATTATGCTGTTGTTTACGTCATTCTCCTTTGTGCGTTGGCCCAAGGGGGTTCAGAGGGGAAAGGGGGAAAGGAAGATGAGTCTTCTAGAGTTGGTGGAGGGGCATCAATTATTTATGTTCATAGATTGAAGGTAGCAAATGACGGTAAACCCTGCAGGAAACAATTGATAGACAGGAACCTTGACTTGCATCCTCTGGAAGGGAGTGGTGACATAAAGAGTATAAAAAGTAACATAAACAGAGAAACTAATTTTCTGCCACTTCATATAAAAAGAAAAACTTTAGACGGCAAAAGAACTAGTTCTAGTCCTGTTTCAGAAAAGGGTAGCTCTAGATATTTGTCAACAGAGCATTCTGGATCAACCTTGGGTGTGGAAAGAGGCCATGGAAGAAACTTGCTTGCTGATTCACCAAAGAAACAAACGGCACCAAGTCCTTCTCCTACACCAGCCAGTTCTCCATTATCACCAAGTAATGGTCCAACACCAGCCAGATCTCCATTATCACCAAGTCATGCACCAACACCAGCCACTTCTCCACCATCAACACCACCTCCAACTCCCAAAAAAAAGGATTTACCACTCCCAAAAGATATGTTTGCACCATTTCCACCTCTACCCCCTATAGCTCGTTCTCCTCCCAAAAATTCTAAACCTACAGTCCAGACTCCTGCTCCTCCAACATCTAGCGCTGATGACAAAAAGAAGAAAACAATTATTTTAGCTACCACTTTATCAGGTGTTGTAATCTTGATAGGCTTGTTCCTATGCTATCGTGAGACCAAAAAGAAGAGAAGTGATAGGGATGACAGGCCTTTGCTCGTATTAACCTCGGATGATTATACTGGCGGTACAAGGAAGGTTGTTCAATTAGGAAATTCTAGAAGGGATGAATATGGCATTGGCGATGGAAAGAACCCTTCTAATGTTAGAAACTTGTCCAGTAGGAAGGGTGTAGATGTCAACGTCTCAATGGTTGACATAGCATCATCATCATCAGAAGGCGGAAGAAAACTAACAGTATCCCCTAGTGCTCATGCTCCGCCAGCTCCTCCCAAACCAGTTGGAGGTGCGAATCATGGACCACTACTTCCTAAAGAAGGAAGTTCAAATGACGGCGATGCTCAAGCTCCAAAACCAAAACTAAAGCCATTTTTTTGGGATAAGGTTAATGCAAAGCCTGGCCAAACAATGGTGTGGCATGAGATCAGTTCGGGATCATTCGTGATCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCGCCAACCAGAACAAGAATGATCGCAAAAGAGATTCATCCTTAGAAAATTCAGTGCAATATATTAAGCTTATTGATCCTAGGAAAGCACAGAACTTGTCAATTCTTTTGCGAGCTCTGAACGTCACAACAGAAGAAGTTGTCGATGCTCTTGTAGAAGGCAATGAGATTCCCATTGAGCTGATACAGACTTTGCTGAAGATGGCACCTACACAAGATGAGGAACTGAAGCTAAGGCTATTCACAGGACAACTGCATGAACTAGGCCCAGCAGAGAGGTTTCTCAAAGTGTTGATTGAGATTCCATTCGCTTTCAAACGTCTTGAATGTCTGTTGTTCATGCATAACCTTCAAGAAGATTTCTCAAGCATTAAGGAATCCTTTGCCACGTTAGAGGTGGCTAGCAACGATCTGAGAAAAAGCAGGCTATTCCTGAAACTCCTAGAAGCAGTTCTGAAAACCGGCAACCGTATGAATGACGGAACCTACCGCGGCCGTGCGCAAGCATTCAGGCTCGACACCCTCCTCAAACTCTCCGACGTCAAGGGAACAGACGGCAAGACCACGCTCCTGCACTTCGTCGTCGAGGAGATCATCCGCTCCGAGGGAATCCGCGCCGCGCGCAACGAAAGAGCCAGCCGGAGCATCTCTAGCGTCAACACCAGCGACGAATCTGACGAGGGCGAGGAGTCCGAGGAGCACTACCGCAGCGTCGGCCTCCAGGTGGTGTCGAGCCTCGGTGCGGAACTCGAGGCTGTGAAGAAGGCGGCGCTGATAGACGGCGACGCGCTCACCACGACGGTGTCGAAGCTGGGGCACTCGTTGGTGAAGACGCAGAATTTTCTTGACACGGACATGAAGAACATTGTGGAAGAGAGCGAGTTCCAGAACAGCATGGAGCAGTTCATGGTAAACGCGAGGAAGGAGGTGATGTGGATGGTGGAGGAGGAGAAGAGGATAATGGCGCTGGTTAAGAGCACTGCCGATTACTTTCACGGCAATGCCGGGAAGGATGAAGGTTTGCGTTTGTTCCTAATCGTACGTGATTTCTTGATCATATTGGACAAGGTTTGCAAAGAAGTGAGGGACACGACCATGACGCCGGCGAAGGCTCCCACCACTACCAAGAAGAAGCCTAAGACTCCTACGGCTTCTTCCCCTAACGCGCGTAATCCAGATTCGCCAAAGCCATCCACTAATCTCCACAGTAAGCTCTTTCCTGCCATTGCTGGGAGGAGAATGGATTACTCTAGCTCTGATAGCTCCGATGATGACGACGACTAA	2580	0.4682	MKLKNIMELTRPNYAVVYVILLCALAQGGSEGKGGKEDESSRVGGGASIIYVHRLKVANDGKPCRKQLIDRNLDLHPLEGSGDIKSIKSNINRETNFLPLHIKRKTLDGKRTSSSPVSEKGSSRYLSTEHSGSTLGVERGHGRNLLADSPKKQTAPSPSPTPASSPLSPSNGPTPARSPLSPSHAPTPATSPPSTPPPTPKKKDLPLPKDMFAPFPPLPPIARSPPKNSKPTVQTPAPPTSSADDKKKKTIILATTLSGVVILIGLFLCYRETKKKRSDRDDRPLLVLTSDDYTGGTRKVVQLGNSRRDEYGIGDGKNPSNVRNLSSRKGVDVNVSMVDIASSSSEGGRKLTVSPSAHAPPAPPKPVGGANHGPLLPKEGSSNDGDAQAPKPKLKPFFWDKVNAKPGQTMVWHEISSGSFVINEEMMESLFGCANQNKNDRKRDSSLENSVQYIKLIDPRKAQNLSILLRALNVTTEEVVDALVEGNEIPIELIQTLLKMAPTQDEELKLRLFTGQLHELGPAERFLKVLIEIPFAFKRLECLLFMHNLQEDFSSIKESFATLEVASNDLRKSRLFLKLLEAVLKTGNRMNDGTYRGRAQAFRLDTLLKLSDVKGTDGKTTLLHFVVEEIIRSEGIRAARNERASRSISSVNTSDESDEGEESEEHYRSVGLQVVSSLGAELEAVKKAALIDGDALTTTVSKLGHSLVKTQNFLDTDMKNIVEESEFQNSMEQFMVNARKEVMWMVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCKEVRDTTMTPAKAPTTTKKKPKTPTASSPNARNPDSPKPSTNLHSKLFPAIAGRRMDYSSSDSSDDDDD	859

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	210	226	-	-
	Vian5g00877	859	Pfam	Formin Homology 2 Domain	386	786	IPR015425	-
	Vian5g00877	859	PANTHER	FORMIN-RELATED	238	849	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	800	833	-	-
	Vian5g00877	859	Gene3D	Formin, FH2 domain	390	819	IPR042201	-
	Vian5g00877	859	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	384	812	IPR015425	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	155	202	-	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	800	859	-	-
	Vian5g00877	859	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	397	798	-	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	642	666	-	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	342	393	-	-
	Vian5g00877	859	SMART	it6_source	384	802	IPR015425	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	111	134	-	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	308	328	-	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	227	241	-	-
	Vian5g00877	859	MobiDBLite	consensus disorder prediction	107	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00877	Vian-Chr5	29418771	29423656	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00877	373	847	FH2 protein (formin) Gene Family	AT5G54650	61.746	0.0	564

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00877	-		-	gmx:100816477	942.184