Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00874 ATGTTAGTGAAAGACCACAATAGAGGGGATGGATCCAAGTCTCTGGCCTATACACTGGCGAGATGGAAAGAGTACAATGCTTGGCTTGAATCTAGCAATGAGGCTGAGAAAGCAGTTAGGAAAGTTCCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAGAACACACTCTGTAACTACAGAGGAGTTAGGCAAAGAACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTTCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAAGGCAATGTATGGTTCTGTTGCACGTCTTAACTTTCCCAACCTTGAAGTTTCAGCTTTATCTGAGGAATCATCAAGAAATTCACCAGCTGGTAGTCAATGTGGTTCTGCATTGGTGATATCAGAGAGTTCTGAATGTATGATATTTCCAAATAGCTCGGAGGGAGACAAAGCTAAGGATGATGACATGGAAGGCCTATCCTTATCCTTAAGTGTTAAACATGAGGTAGTGTAG 558 0.4427 MLVKDHNRGDGSKSLAYTLARWKEYNAWLESSNEAEKAVRKVPAKGSKKGCMKGKGGPENTLCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFSTAISAALAYDEAAKAMYGSVARLNFPNLEVSALSEESSRNSPAGSQCGSALVISESSECMIFPNSSEGDKAKDDDMEGLSLSLSVKHEVV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00874 185 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vian5g00874 185 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vian5g00874 185 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vian5g00874 185 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vian5g00874 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 148 - -
Vian5g00874 185 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Vian5g00874 185 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vian5g00874 185 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vian5g00874 185 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vian5g00874 185 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00874 Vian-Chr5 29376261 29376818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00874 11 153 AP2-EREBP Transcription Factor Family AT2G40340 54.422 2.27e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian5g00874 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00874 - - gmx:100783729 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00713 11 7583002 7583607 Vian5g00874 5 29376261 29376818 PCT