Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00871 ATGGATTTCATCACACAAGTTTTCTCCATTCGTGACAAACACTCTGACATTAGGGTTCTTTGTTTTCGTGCACGTTTGAGTTTTTCACGGTTAAACGGTTTGATTCGTAGGGCTATTAGGCATAACGTTAGAGAGCTTGATATCGAAGCGTCAACAGTGTGTACAGATGATTACTTCAACTTTCCTAGATGTGTTATTGGGAGTGAATCTCTAAGGGTTTTGAAACTAAGGTCAGGTTTTCGTCTGCCTCCATCATCAGTGATGAGGCATGGCTTTCAATCTCTTAAAACCTTGTCTCTTTCCTTTGTTATTTTGAACAACCAACCTTCTCTCACTGATTTGTTCTCTGAATCATCCTTTCCTCTTCTTCAAACTCTCCACCTTGATGCATGTTTCGGGTTGAAATATCTTCGTGTTGGATGTAGGGCCCTTGTAGATTTGAACTTAGAGAAGTGTAATGAGCTAGAGGGTTTGGATGTCTCATGTGCAAAACTTGAAAGAATGAGATTGGTGGAATGTTTTGTAGCCTATAGTGAGAAGAGTTGGGTAAAGATCAATGCACCAATGCTTGAACATTTGTGTTGGCAGCATAATGCAGTCACTGACATGGCTATGTTTGAGCCTTGGAATTTGTTGCATGAGGTCACACTTGGTTTCTTTATATTGACAAGAGAGAATAGTCAGAGTCAGCTTCAAAGTGCTGTTGAATTATTATCTGGACTGTCTCGTGTGCATTCCTTGTCTCTTGAAAGGGAAACTATTGAGATTCTGTCAAATAATCACCTCCTTTTTCAGCCATTTTATGATCTTAAACATTTAGAACTGCAAACTGGTTTCAACAAAAGTAATGTTCCGGGATTGACATGTCTATTCAAGAGCTCTCCCACTCTCAACACCTTGATTCTCAAGATCATCCATGAATATAAGATTGAAAGAAAAGAATGGAATAGAGACTTGTGGGACATGACTATCACTGAGGGAGAACAGTATTGGGAGTCTCAGATCAGAACTCTGGAGTCTTTTCTACAACATTTGAAAGTGGTAAAAATTCATGGATTTCTTGATTACGAGAATGAAGTTGCACTTGCAAAGTTTCTCCTTAAGCATGGAAAATCCTTGGAAGAAATGCAAACCGACGTTGTTCCACTTGTTCAATCTGCGAAGAAGCCTGCCCAGCCTAAGGAATCGAAACCCAAACCTAAGGATGAGCCGAAGAAAGTGGCTAAGCCAGAGCCAGGGAAGCCCAAAGAAGAGGCAGAAGAGGAGGCACCCAAGCCCAAACCCAAAAATCCCCTTGATCTTCTTCCTCCAAGCAAGATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTTCGCGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCCAGAGGCAGATGGATCTGGCTCGCAAATTCCACAATTTGTGATTGACGAGTGTTATGATATGGAGATGTACGAGTGGACCAAGGTTGACATCTCTGACAAAACTCAGAAAGATCGGTCTTTAAGAGCTTATGATTTTGTTGCGTCTTTTGGAAAGATTGCTCGGCTCAATGGTGACAACACATTGTACCTGTCTACTCCCATTGATAAAGAGGTGGGTAGTATTATTTTGGGGGCAAATGTCATGATTGAGATAGCTGGCCTTGCTGACATAAAGTCATCATTGAACTTACACACTACTCCTACCCATTCTCTCTCTTTTCTATATAATCTCAACCCACACGGACCCCTTTCCACTCCTCCACAACTCCCTTGCTTTTCATCATCATCATCATCCCCTTCTTACTCTTTCTCTCTCTCAACTACACCTCAATCTCACTCCCTCGTTACCCAACTTCTTCAACGGCTAAAATTTAAAAAGTTAGAGATGATGGTTCTAAAGGAAGATTTAGGCCCGCATCGACAAGTGGATTGA 1941 0.4127 MDFITQVFSIRDKHSDIRVLCFRARLSFSRLNGLIRRAIRHNVRELDIEASTVCTDDYFNFPRCVIGSESLRVLKLRSGFRLPPSSVMRHGFQSLKTLSLSFVILNNQPSLTDLFSESSFPLLQTLHLDACFGLKYLRVGCRALVDLNLEKCNELEGLDVSCAKLERMRLVECFVAYSEKSWVKINAPMLEHLCWQHNAVTDMAMFEPWNLLHEVTLGFFILTRENSQSQLQSAVELLSGLSRVHSLSLERETIEILSNNHLLFQPFYDLKHLELQTGFNKSNVPGLTCLFKSSPTLNTLILKIIHEYKIERKEWNRDLWDMTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKSLEEMQTDVVPLVQSAKKPAQPKESKPKPKDEPKKVAKPEPGKPKEEAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEADGSGSQIPQFVIDECYDMEMYEWTKVDISDKTQKDRSLRAYDFVASFGKIARLNGDNTLYLSTPIDKEVGSIILGANVMIEIAGLADIKSSLNLHTTPTHSLSFLYNLNPHGPLSTPPQLPCFSSSSSSPSYSFSLSTTPQSHSLVTQLLQRLKFKKLEMMVLKEDLGPHRQVD 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00871 646 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 428 471 IPR001662 GO:0003746|GO:0006414
Vian5g00871 646 Pfam FBD 339 376 IPR006566 -
Vian5g00871 646 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 476 511 IPR044628 GO:0004364
Vian5g00871 646 SUPERFAMILY RNI-like 26 321 - -
Vian5g00871 646 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 428 473 IPR036433 GO:0003746|GO:0006414
Vian5g00871 646 Gene3D Ribonuclease Inhibitor 40 380 IPR032675 -
Vian5g00871 646 MobiDBLite consensus disorder prediction 381 435 - -
Vian5g00871 646 SUPERFAMILY eEF1-gamma domain 428 507 IPR036433 GO:0003746|GO:0006414
Vian5g00871 646 SMART EF1G_2 427 486 IPR001662 GO:0003746|GO:0006414
Vian5g00871 646 Pfam Elongation factor 1 gamma, conserved domain 427 471 IPR001662 GO:0003746|GO:0006414
Vian5g00871 646 MobiDBLite consensus disorder prediction 392 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00871 Vian-Chr5 29344177 29352416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00871 461 508 Eukaryotic Initiation Factors Gene Family AT1G57720 56.250 2.06e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00871 - - gmx:100819136 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00871 5 29344177 29352416 Vian5g00871 5 29344177 29352416 ECH