Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00866 ATGGTGAGAACCCCATCTTCTGACAACAGTGGACTGAGGAAGGGTGCTTGGTCTCCCGACGAAGATACAAAATTAGTTGCCTATATTACTAGATATGGTCACTGGAATTGGAGCCAACTTCCCAGGTTTGCAGGTCTGGCAAGAAGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTGAGGCCTAACGTCAAAAGAGGGAACTTCACTCCACAACAAGAAGAATGCATCATCAGAATACACGCAGAACGTGGTAACAAATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATTTGGAAGTAAAAAACCATTGGCACACCACCCTCAGGAAAAGGTCTCAAGAAGAAGCACTCGCGATAGAAGAAACTAGAGCTTCCAAATCATCAAAGAATAAGGAATCCATGGACTTGGTTCCCAACTGTAATGGTGCTGCTGTTCCTTTTTCTGCTACTTCCCAGATTACAAATAGTTCATCACCCTTATTCTCATTCTCGTCACTGTCATCCTCCAGCAAGGAGTTTTCCTCAGGGCCATGTTTCCCTTGA 555 0.4432 MVRTPSSDNSGLRKGAWSPDEDTKLVAYITRYGHWNWSQLPRFAGLARSGKSCRLRWMNYLRPNVKRGNFTPQQEECIIRIHAERGNKWSAIAAELPGRTDLEVKNHWHTTLRKRSQEEALAIEETRASKSSKNKESMDLVPNCNGAAVPFSATSQITNSSSPLFSFSSLSSSSKEFSSGPCFP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00866 184 CDD SANT 69 112 IPR001005 -
Vian5g00866 184 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian5g00866 184 CDD SANT 16 61 IPR001005 -
Vian5g00866 184 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian5g00866 184 Gene3D - 68 140 - -
Vian5g00866 184 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian5g00866 184 SMART sant 66 114 IPR001005 -
Vian5g00866 184 SMART sant 13 63 IPR001005 -
Vian5g00866 184 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian5g00866 184 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 156 - -
Vian5g00866 184 Gene3D - 6 66 - -
Vian5g00866 184 FunFam MYB-related transcription factor 13 66 - -
Vian5g00866 184 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian5g00866 184 MobiDBLite consensus disorder prediction 160 184 - -
Vian5g00866 184 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vian5g00866 184 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00866 Vian-Chr5 29254211 29255016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00866 1 115 MYB Transcription Factor Family AT2G31180 61.739 1.11e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g00866 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00866 K09422 - gmx:100777107 234.958