Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00865 ATGGTGAAAACCCCATCTTGTGACAAAAGTGGACCGGGGAAGGATACTTGGACTCCGGAGGAAGATAGAAAATTAATTGCCTATGTCACAAGATATGGTTTCTGGAATTGGAGACAACTTCCCAGGTTTGCAGGTCTGGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATCATCTGAGGCCGAAAATCAAAAGAGCGAACTTCAGTTCAGAAGAAGAAGAATACATCCTCAGAATGCACACAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCCGGAAGAACAGATGTGGAAGTAAAAAACCATTGGCAGACCACTCTCAAGAAAAGGTCTCAAGAAGAAGCACTCGCGAAAGAAGAAACTAGAGCTTCAAAATCATCAAAGAATAAAGAATCCACGAGTAATGGTGTTCATGTTCCTTTTCCTGCTTCTTCCCAGAATTCAAATGATTCTGTAGACATATCATTCTCGTCACTTTCATCCTCCAGCGACGAGTATTCCTCGGGGCCCTGTTTCCCTTAA 537 0.4302 MVKTPSCDKSGPGKDTWTPEEDRKLIAYVTRYGFWNWRQLPRFAGLARCGKSCRLRWMNHLRPKIKRANFSSEEEEYILRMHTKLGNRWSAIAAELPGRTDVEVKNHWQTTLKKRSQEEALAKEETRASKSSKNKESTSNGVHVPFPASSQNSNDSVDISFSSLSSSSDEYSSGPCFP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00865 178 CDD SANT 69 112 IPR001005 -
Vian5g00865 178 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian5g00865 178 CDD SANT 16 61 IPR001005 -
Vian5g00865 178 MobiDBLite consensus disorder prediction 133 178 - -
Vian5g00865 178 SMART sant 13 63 IPR001005 -
Vian5g00865 178 SMART sant 66 114 IPR001005 -
Vian5g00865 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian5g00865 178 Pfam Myb-like DNA-binding domain 17 76 - -
Vian5g00865 178 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian5g00865 178 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Vian5g00865 178 MobiDBLite consensus disorder prediction 114 178 - -
Vian5g00865 178 FunFam MYB-related transcription factor 13 66 - -
Vian5g00865 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 61 IPR017930 -
Vian5g00865 178 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 162 - -
Vian5g00865 178 MobiDBLite consensus disorder prediction 114 132 - -
Vian5g00865 178 Gene3D - 15 66 - -
Vian5g00865 178 Gene3D - 68 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00865 Vian-Chr5 29249722 29250504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00865 1 160 MYB Transcription Factor Family AT2G31180 50.307 5.91e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g00865 Myb_DNA-bind_6 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00865 K09422 - vun:114168966 243.047