Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00864 ATGAAGAAGTGCGAACTGTGTAAGCTTCCGGCCAGGATTTTCTGCGAGTCGGACCAGGCCAGTTTATGCTGGGACTGCGACGCCAAGGTTCACAGCGCAAACTTCTTGGTCGCCAGACACTCGCGAACCCTCCTCTGCCGTACGTGCCACTCTCCCACGCCGTGGAAGGCCGCCGGAGCCAGACTCTCTAACGCCGCCTCCATCTGCCACCGCTGCGCCGCCTCCGCCGCCTCCGCCGCAGAAGAACCGGACGAGACCGAATCCGGCAATGACGAGGAACCAAGCACGGAGGAGGACGATGTCTCCGGCGAGGAAGACGGCGAGAACCAGGTCGTGCCGTGGTCCTCCACACCGCCTCCGCCGGCGAGCTCCTCCAGCAGCGAGTGGTCGTCGTTCAGCGGGTGCAAAAACGACGACGACGAAGGTGCTTCTGTTTCCGTATGTGAACCGGAAACGACAACATCCTCTTTGAAACGACAACGCGAGAACGACGACGGTGTATCCGGCCGTGATCCGCAGGTGGCGTATGACGGAGAATCGTTGGAGGAGATTTCAACCACTCGCTACGACGACGTTTCGTGTTGGGGAAAGCAAGAGTCTCTGAACCGATGA 612 0.6046 MKKCELCKLPARIFCESDQASLCWDCDAKVHSANFLVARHSRTLLCRTCHSPTPWKAAGARLSNAASICHRCAASAASAAEEPDETESGNDEEPSTEEDDVSGEEDGENQVVPWSSTPPPPASSSSSEWSSFSGCKNDDDEGASVSVCEPETTTSSLKRQRENDDGVSGRDPQVAYDGESLEEISTTRYDDVSCWGKQESLNR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00864 203 CDD Bbox1_BBX-like 3 45 - -
Vian5g00864 203 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 148 - -
Vian5g00864 203 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Vian5g00864 203 MobiDBLite consensus disorder prediction 84 106 - -
Vian5g00864 203 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vian5g00864 203 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vian5g00864 203 MobiDBLite consensus disorder prediction 79 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00864 Vian-Chr5 29233475 29234295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00864 2 121 C2C2-CO-like Transcription Factor Family AT5G54470 45.985 1.07e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian5g00864 zf-B_box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00864 - - vun:114168631 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00864 5 29233475 29234295 Vian5g00864 5 29233475 29234295 ECH
Vian11g00721 11 7655930 7656796 Vian5g00864 5 29233475 29234295 PCT