Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00861 ATGTTGAACAAGAAACCACCGTTGTTATGGCTTTCTCTCCTTATCACATGCTTCTTCTCTTTCCACATCTGTACTTCACTCGCAGCTTTGACCACCATCTCAGCAAATCAATCTCTCTCTGGGGATCAAACTCTTGTCTCCCAAAACGGAAACTTTGAAATGGGTTTCATCACCACAGGTAACAACTCTAAATACTATATAGGCATGTGGTACAGAAAGATATCTCAAAAGACTTATGTTTGGGTCGCAAATAGAGACGACCCAGTTTCTGATAAGAATTCTGCTAAATTAACAATATTGGGTGGTAATTTAGTGGTCTTAGACCAGTCCCAAAATATAGTTTGGTCAACGAATTTGAGTTCTCCTAGCTCAGGTTCTGTGGTAGCCGTGCTTCTAGATTCTGGGAATCTTATATTAAGTGATAGGCCTAATGCATCGGCAACTGATGCTATGTGGCAGAGTTTTGATCACCCCACAGACACGTGGCTTCCCGGTGGCAAGATAAGTTTGAACAACATAACAAAGAAGCCACAGTATCTGACTTCATGGAAGAATGTTGAAGATCCTGCAACGGGAATGTTCTCTCTTGAACTAGACCCTGAAGGAAGCAATTCGTATTTGATTCGTTGGAATAGAACTGAGCAGTATTGGTCAAGTGGTTCTTGGAATGGACAAATTTTCAGCTTGGTTCCTGAGATGAGACTAAACTACATCTACAATTTCACCTTTGTGTCCAACGAGAACGAGAGCTACTTCACCTACTCCTTGTATAACGAGTCTATTATATCTCGCTTTTTTATGGATGTCTCGGGTCAGATTAAGCAACTAACGTGGCTGGAGAATGCTCAGCAGTGGAATTTGTTCTGGTCTCAGCCTCGGCAACAGTGTGAGGTGTATGCCTTCTGTGGTGGATTTGGGACCTGCACTGAGAATTCCATGCCATATTGTAGTTGTTTGACTGGGTATGAGCCAAAGTCACAAACTGATTGGAATCTTACGGATTACTCAGGGGGGTGTGTGAGAAAGTCGGAGTTGCAATGTGCCTCACCAAACTCCTCTAACAAGGACAGTGACAGGTTCCTCTCAATTCTCAACATGAAATTGCCTAATCATTCACAATCCATAGGAGCCGGGGATGTTGGGGAATGTGAAGCAACATGCTTAAGTAACTGTTCTTGTACTGCGTATGCTTATGACAATGGTGGTTGTTCAATTTGGTATGGTGATCTCTTGAACCTGCAACAGCTTACTCAAGATGACAGCAGTGGGCAGACTTTGTTTCTCAAACTTTCAGCGTCTGAGTTTCATGATTCTAAAAGCAATAAAGGGACACTCATTGGTGCTGTTGCTGGAGCTGTTGGTGGTGTGGTGGTTCTTCTAGTTGTTTTGGTGTTTGTGATTCTGCGGCGCAGAAAGAGACATGTTGGGACAGGAACATCTGTGGAGGGCTCATTGGTGGCATTTGGGTATAGGGATTTGCAAAATGCCACGAAGAATTTCTCAGAGAAACTGGGAGGAGGGGGTTTTGGCTCTGTCTTCAAAGGAACATTGTCTGATTCTAGTGTCATTGCAGTGAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAGCAGTTCAGAACAGAAGTGAGCACAATTGGGACAGTCCAACATGTGAATCTTGTAAGGCTTCGCGGGTTCTGTTCCGAAGGTACTAAAAAACTTCTGGTTTATGATTACATGCCAAATGGTTCCTTGGATTCGAAAATGTTTCAGGAAGATAGCTCAAAGGTGTTGGATTGGAAACTGAGGTACCAAATTGCTCTTGGAACAGCAAGAGGGTTGACTTACCTTCACGAGAAGTGTAGAGACTGCATCATACACTGTGATGTGAAGCCAGAAAACATTCTCCTTGATGCTGATTTTGTTCCAAAGGTGGCAGACTTTGGCCTTGCAAAGCTGGTTGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGGACAAGAGGTTATCTTGCCCCAGAGTGGATATCAGGTGTGGCTATCACTGCCAAAGCTGATGTCTACAGCTATGGAATGATGCTTTTCGAGTTTGTGTCAGGTAGGAGGAACTCTGAGGCATCGAAAGATTGTGAAGTGAGATTCTTCCCTACTTTTGCTGCAAACACTGTCCACCAAGAAGGGAATGTGCTTAGCTTGTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAAGAGGTCACTAGAGTCATAAAAATTGCTTCATGGTGTGTCCAAGATGATGAATCTCATAGACCTTCCATGGGTCAGGTGGTTCAAATCCTTGAAGGGTTCTTGGATGTGACTTTGCCTCCAATTCCAAGGACCCTTCAAGCCTTTGTTGACAACCATGAGAACATAGTTTTCTTCACTGACTCCAGCTCCACCCAGAGTTCACAGGTAAAGAGTACCTCCTCTCAAGCCAAGAGCAATACCTCATCCAATAATTCTCAGTCCTCATGA 2481 0.4397 MLNKKPPLLWLSLLITCFFSFHICTSLAALTTISANQSLSGDQTLVSQNGNFEMGFITTGNNSKYYIGMWYRKISQKTYVWVANRDDPVSDKNSAKLTILGGNLVVLDQSQNIVWSTNLSSPSSGSVVAVLLDSGNLILSDRPNASATDAMWQSFDHPTDTWLPGGKISLNNITKKPQYLTSWKNVEDPATGMFSLELDPEGSNSYLIRWNRTEQYWSSGSWNGQIFSLVPEMRLNYIYNFTFVSNENESYFTYSLYNESIISRFFMDVSGQIKQLTWLENAQQWNLFWSQPRQQCEVYAFCGGFGTCTENSMPYCSCLTGYEPKSQTDWNLTDYSGGCVRKSELQCASPNSSNKDSDRFLSILNMKLPNHSQSIGAGDVGECEATCLSNCSCTAYAYDNGGCSIWYGDLLNLQQLTQDDSSGQTLFLKLSASEFHDSKSNKGTLIGAVAGAVGGVVVLLVVLVFVILRRRKRHVGTGTSVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLSDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKKLLVYDYMPNGSLDSKMFQEDSSKVLDWKLRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEASKDCEVRFFPTFAANTVHQEGNVLSLLDPRLEGNADIEEVTRVIKIASWCVQDDESHRPSMGQVVQILEGFLDVTLPPIPRTLQAFVDNHENIVFFTDSSSTQSSQVKSTSSQAKSNTSSNNSQSS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00861 826 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
Vian5g00861 826 Gene3D - 26 155 IPR036426 -
Vian5g00861 826 FunFam Serine/threonine-protein kinase 465 572 - -
Vian5g00861 826 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vian5g00861 826 MobiDBLite consensus disorder prediction 801 826 - -
Vian5g00861 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vian5g00861 826 Gene3D Transferase(Phosphotransferase) domain 1 573 775 - -
Vian5g00861 826 PIRSF SRK 3 823 IPR024171 GO:0004674
Vian5g00861 826 ProSiteProfiles Protein kinase domain profile. 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00861 826 SMART blect_4 36 158 IPR001480 -
Vian5g00861 826 Gene3D Phosphorylase Kinase; domain 1 464 572 - -
Vian5g00861 826 FunFam Serine/threonine-protein kinase 573 776 - -
Vian5g00861 826 FunFam Serine/threonine-protein kinase 25 155 - -
Vian5g00861 826 CDD B_lectin 36 158 IPR001480 -
Vian5g00861 826 Pfam Protein kinase domain 501 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00861 826 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Vian5g00861 826 SUPERFAMILY Protein kinase-like (PK-like) 484 806 IPR011009 -
Vian5g00861 826 SMART serkin_6 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00861 826 CDD STKc_IRAK 504 771 - -
Vian5g00861 826 Pfam PAN-like domain 354 412 IPR003609 -
Vian5g00861 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 223 IPR036426 -
Vian5g00861 826 PANTHER OS07G0415500 PROTEIN 11 780 - -
Vian5g00861 826 CDD PAN_AP_plant 345 431 - -
Vian5g00861 826 SMART ntp_6 355 430 IPR003609 -
Vian5g00861 826 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Vian5g00861 826 Pfam D-mannose binding lectin 78 184 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00861 Vian-Chr5 29199798 29202278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00861 480 778 Receptor kinase-like Gene Family AT5G20050 44.762 9.17e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian5g00861 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00861 - - gmx:100305421 1397.1