Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00859 ATGGTGAGAACCCCTTACTGTGACAATAATGGCCTGAGAAAAGGAACATGGACACCAGAAGAAGATTGGAAGTTGATTTCTTATGTCACTACACATGGCCACAAGAATTGGCGCCAATTGCCTAAGTTTGCTGGTCTTTCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTACTTAAGGCCAGGCATCAAAAGAGGGAACTACACTTATGAAGAAGAAGAGATAATTATCAAACTGCACCAAATTCATGGAAATAGGTGGTCAGTGATTGTCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAATTGAAGCTTCCACCTCAAAACAGCACTCCCTTGTAGAATCAATTCAAGAGGAATCTGGGGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTGCCTAGCTACTTCCCAAACTCCTGACAGTGATTCTCCATCGCCCCAGCACACATCATTGAGAGATGCTTTGTGCATGATATCTGAACTTGAACCTGAAGCAGCCAGTAACGGGAATTTGGCTACTGATAACTTTGCTGACTTTATGGAGCAAAACACAGATCCTATCAGTGCATATTCTTGGGAAGAACTTTATGAAATTTCATATTTATGTGAATTTCTCGCTCCTTCGTACTGA 702 0.4131 MVRTPYCDNNGLRKGTWTPEEDWKLISYVTTHGHKNWRQLPKFAGLSRCGKSCRLRWMNYLRPGIKRGNYTYEEEEIIIKLHQIHGNRWSVIVSHLPGRSDNEIKNHWHAHLKKRFQHNSETNEKIEASTSKQHSLVESIQEESGEVVASSFQNSCLATSQTPDSDSPSPQHTSLRDALCMISELEPEAASNGNLATDNFADFMEQNTDPISAYSWEELYEISYLCEFLAPSY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00859 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian5g00859 233 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vian5g00859 233 CDD SANT 69 112 IPR001005 -
Vian5g00859 233 CDD SANT 16 61 IPR001005 -
Vian5g00859 233 FunFam MYB-related transcription factor 13 66 - -
Vian5g00859 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vian5g00859 233 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian5g00859 233 Gene3D - 69 141 - -
Vian5g00859 233 SMART sant 13 63 IPR001005 -
Vian5g00859 233 SMART sant 66 114 IPR001005 -
Vian5g00859 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 173 - -
Vian5g00859 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vian5g00859 233 Gene3D - 14 66 - -
Vian5g00859 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian5g00859 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00859 Vian-Chr5 29157436 29158794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00859 1 125 MYB Transcription Factor Family AT1G06180 64.800 1.03e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g00859 Myb_DNA-binding 4.2e-14 CL0123