Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00858 ATGATCATCAGATGGTCTGCTATTGCTGCACAGATTCCAGGAAGAACAGACAATGAAATAAAAAACCATTGGCACACGAACCTGAAGAAACGATTTGAACAAGACACAGGCACAGAATCTCAAGTTTCAAACTCATGTGAACGATCCCCATCAACAACAAGTGCAAATACTTTCCAAAGCTTTAACTCCACGGAAGATTGTTCCCCATTTTCCCAGCATTCATCATCCTCCACAACAAGCGCAGAATGTAACACTGTAACCATCAACGAAAATCTGGATCTGCAAGATGAATTTTCCTTTTGGGACGCTGACACAGATCTTGTGAGTGCCAATTTCTGGTTGGAGCCATATCTACATGATCTTTCATTCGCAGCTACTGAACCTGAGTTCCTCACTTTTGATGCACAACTTTGGAGCCATGATAACTGA 429 0.4196 MIIRWSAIAAQIPGRTDNEIKNHWHTNLKKRFEQDTGTESQVSNSCERSPSTTSANTFQSFNSTEDCSPFSQHSSSSTTSAECNTVTINENLDLQDEFSFWDADTDLVSANFWLEPYLHDLSFAATEPEFLTFDAQLWSHDN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00858 142 MobiDBLite consensus disorder prediction 33 81 - -
Vian5g00858 142 Pfam Myb-like DNA-binding domain 4 28 IPR001005 -
Vian5g00858 142 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 32 IPR017930 -
Vian5g00858 142 Gene3D - 3 57 - -
Vian5g00858 142 SUPERFAMILY Homeodomain-like 4 36 IPR009057 -
Vian5g00858 142 CDD SANT 3 28 IPR001005 -
Vian5g00858 142 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 91 - -
Vian5g00858 142 ProSiteProfiles Myb-like domain profile. 4 28 IPR001005 -
Vian5g00858 142 MobiDBLite consensus disorder prediction 37 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00858 Vian-Chr5 29108927 29109355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00858 4 88 MYB Transcription Factor Family AT3G23250 44.565 1.15e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian5g00858 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00858 K09422 - gmx:100778518 169.474