Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00855 ATGGAGAGGAACAACATAATGATGGTAAGAACTCCTTTCTATGACAAAAATGGAGTGAAGAAAGGTGCATGGAGCAGAGAAGAAGATGATAAGTTAAGAGCTTATGTTCACACTTATGGTCACTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGACCAAATCTAAAACACGGGAACTACACCCCAGAGGAAGAAGAAATAATCATCAGATTACACCAACAATTTGGAAATAGATGGTCCTTGATAGCTGAAAAACTTCCTGGAAGAACAGACAACGAGGTAAAGAACTATTGGCACAGCCACCTGAAGAAGAGCTTGAAGAGAAGTGAAATGACAGCATCTGAGCTGAAGTTGAAGGGAGGTGATAACAAGAGTTTTGAAGGAAATTTAAAGGAGAGTGGTGAATATGAAAATTCTGAAAAGCTAGGAGGCAATAGTGGTGATGATATCTTCCCTCATATTTTAGAAAGTTCATTGGCCATTTCCGCAGAAACACCAGAAGGAGACAACTATACGCTTATCACTGGTGCTGAAGAAGATGGTGTTCCTCCATTGCTATCATACAAAGAATTCAGCGGCGATTTTTGGTCTGAGCCGTTCCTTCTAGAAGATACTATTCATACTTTTAAAGATGACATTTGCACTGGAAAAGGAATGGCTTTGTTAATTCCAAACTTCGATGCTGCATATTTCTTGTAA 750 0.3973 MERNNIMMVRTPFYDKNGVKKGAWSREEDDKLRAYVHTYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTPEEEEIIIRLHQQFGNRWSLIAEKLPGRTDNEVKNYWHSHLKKSLKRSEMTASELKLKGGDNKSFEGNLKESGEYENSEKLGGNSGDDIFPHILESSLAISAETPEGDNYTLITGAEEDGVPPLLSYKEFSGDFWSEPFLLEDTIHTFKDDICTGKGMALLIPNFDAAYFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00855 249 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Vian5g00855 249 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Vian5g00855 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 136 - -
Vian5g00855 249 CDD SANT 76 119 IPR001005 -
Vian5g00855 249 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Vian5g00855 249 Gene3D - 75 144 - -
Vian5g00855 249 CDD SANT 23 68 IPR001005 -
Vian5g00855 249 Gene3D - 20 73 - -
Vian5g00855 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Vian5g00855 249 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Vian5g00855 249 MobiDBLite consensus disorder prediction 130 155 - -
Vian5g00855 249 SMART sant 73 121 IPR001005 -
Vian5g00855 249 SMART sant 20 70 IPR001005 -
Vian5g00855 249 MobiDBLite consensus disorder prediction 130 162 - -
Vian5g00855 249 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Vian5g00855 249 FunFam Transcription factor RAX3 14 74 - -
Vian5g00855 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00855 Vian-Chr5 29017985 29019852 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00855 8 222 MYB Transcription Factor Family AT2G31180 44.292 1.06e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g00855 Myb_DNA-binding 8.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00855 K09422 - gmx:100781032 238.424