Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00852 ATGGAGTTTGACCTTGAAAACCCTTTGGAAAATCTTCACTCCGATGCTGTCTCTTATCTCTTCCTCATTGAATCTGACCACACCCTATCACAGAATCATTCTCACACTCTCAAAGCTAGAGATCTTGACATCTCTGTCAGAAGAGAACTTCTTTCCTTAATCGCAAAGTTGTCCTGCACTTTGGATCCGGCTTTTTCTTATCTTGCTACCAACTATCTGGATCGGTTCCTAGCCAGCCAAGGGATTTCGCAACCGAAGTCATGGGTCCTCAGGCTCATTGCTGTCTCCTGTATTTCTCTAGCTGTCAAGATGATGAGAACTGAATGCTCAGATGCTCAGGATATTTTGAATCAAAGTGATGGGGGCATCATCTTTGAGACACAAACAGTGCGAAGAATGGAAGCACTTATCTTGGGAGCATTACAATGGAGAATGCGGTCGATCACTCCATTCTCTTTCATACCTTTCTTCATTGCCTTGATGGGTCTCGAAGGCTCACCAATGGGGAGGGTTCTGAAAAACCGTGCTTCTGAAATCATATTCATGTCACAAAGAGAGATAAGGCTTTGGGAGTTCAAGCCATCTATGACTGCTGCATCTGCTCTTTTGTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCGTCCTTCTTAAAAGCAATAACCGAGTCTTCATATGTAAATAAAGAAAGCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAGGAGTACGAGTCTGCGTTGAATGGGGATTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTCAGCTCAGAAAGTGAAAAAACCAACGGAATCACCGTTGCTGATTCTCCTCTGAGACAAGAGAGGGACCTCAAAAGAAGGAAAATCACTCTATGTGGAAACAATCCAACGATCCACAACTCTTGA 933 0.4341 MEFDLENPLENLHSDAVSYLFLIESDHTLSQNHSHTLKARDLDISVRRELLSLIAKLSCTLDPAFSYLATNYLDRFLASQGISQPKSWVLRLIAVSCISLAVKMMRTECSDAQDILNQSDGGIIFETQTVRRMEALILGALQWRMRSITPFSFIPFFIALMGLEGSPMGRVLKNRASEIIFMSQREIRLWEFKPSMTAASALLCASHELFPFQYPSFLKAITESSYVNKESVEQCYKVIQDIAIEEEYESALNGDSRSDTPINVLDHHFLSSESEKTNGITVADSPLRQERDLKRRKITLCGNNPTIHNS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00852 310 SUPERFAMILY Cyclin-like 129 244 IPR036915 -
Vian5g00852 310 Gene3D - 30 146 - -
Vian5g00852 310 SUPERFAMILY Cyclin-like 13 145 IPR036915 -
Vian5g00852 310 Gene3D - 23 237 - -
Vian5g00852 310 FunFam D6-type cyclin 30 142 - -
Vian5g00852 310 Pfam Cyclin, N-terminal domain 21 145 IPR006671 -
Vian5g00852 310 SMART Cyclin_C_2 148 262 IPR004367 -
Vian5g00852 310 Pfam Cyclin, C-terminal domain 148 247 IPR004367 -
Vian5g00852 310 PANTHER CYCLINS 45 250 IPR039361 -
Vian5g00852 310 FunFam D6-type cyclin 143 237 - -
Vian5g00852 310 CDD CYCLIN_AtCycD-like_rpt2 148 239 - -
Vian5g00852 310 SMART cyclin_7 48 139 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00852 Vian-Chr5 28945883 28947577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00852 1 295 Core Cell Cycle Gene Families AT4G03270 41.667 7.15e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00852 K18812 - gmx:100820404 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00852 5 28945883 28947577 Vian5g00852 5 28945883 28947577 ECH
Vian11g00733 11 7870984 7872670 Vian5g00852 5 28945883 28947577 PCT