Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00842 ATGACGGTTTCTTCCTTCTTCAACAGGGCCTCCAGGGTTCTAAGCCCCTCCAATTTTCTTTTTCTCTGCACTCTCAGTGGTGGTGGTGTGGTTGCGTACTCAGAATCACAAACAGGAGCTGAACGTCCTAGTATTCAAGCTACTGAGCCCTCCAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGATCTGGATGCATCATTATATGATGTTCAGGTTGTTTCGCCGCGTAATTACTTTGCATTTACTCCCTTATTACCTAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATTAAAAAGAGAAAAGGAGAAATAAACTTCTGGGAAGCAGAATGCATCAAGATTGATTCTTCAAACAAAAAGGTTTTCTGCCGGTCCAATATTGACAACTTGGTGGGAAGTGGCGAATTTTCCTTGGACTATGATTTCTTGGTTGTAGCAGTGGGAGCACAAGTAAATACATTTAACACTCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAGGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGGCTGTTCTTCCTAGTATAACTGACCAAGAGCAAAGGTCAATTCTTCATTTTGTTGTAGTGGGAGGAGGTCCAACTGGTGTGGAATTTGCTGCAGAATTGCATGATTATGTCCTAGAAGATTTAATCAAATTATATCCAACTGTCAAAGATAAAGTGAAAATAACAGTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGACAGAATAAGTTCATTTGCTGAGCAAAAATTTACAAGAGATGGGATAGAAGTTCAAACAGGATGTCGGGTCATCGGTGTTGATGACAAGGTTATTACAATGAAGGAAAAATCAACTGGAGAGGTTTGCTCAGTGCCCCATGGATTGGTTGTCTGGTCAACTGGCATTTCAACCCTTCCAGTTATAAGGGACTTTATGAAAGAAATTGGTCAGGCTGAAAGGCATGTACTAGCAACAAATGAATGGTTGCGTGTGAAGGGATGTGAAGAGGTGTATGCCCTTGGTGATTGTTCTAGCATAACTCAACGTAAAATCATGGATGATATCACAGCCATATTTGAGGCTGCAGACAAAAATAAGTCAGGCACCTTAACTATTGAAGAATTCCAGGAGGTGGTGGATGACATTGTCTTAAGATATCCGCAAGTTGAGCACTATCTAAAGCAAAAACATCTGCGTGATTTTAGCACACTATGGAAAGATTTGCAAGGGAATGAAAGCAAGGAAATAGGCATAGAAGCATTCAAGCTGGCCCTTTGTCATGCAGATTCACAGGTGAAGAGTCTGCCAGCAACTGCACAGGTTGCTGCCCAACAGGGTGCATATCTAGCTAGATGCTTCAACCACATGGATCATGCTGAAGAGAATCCTGAAGGTCCTCGACGTTTTAGTGGATCTGGACGCCATAAGTTTCTGCCCTTTCGGTATAGGCATCTGGGTCAATTTGCTCCACTGGGTGGGGAGCAGACAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGAACAAGGGTCTTGGTCGTGTCTGATTGGACAAGAAGATTCATATTTGGCAGGGATTCAAGTCGAGTTTAA 1722 0.4309 MTVSSFFNRASRVLSPSNFLFLCTLSGGGVVAYSESQTGAERPSIQATEPSKKKVVVLGTGWAATSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEINFWEAECIKIDSSNKKVFCRSNIDNLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQRIRLSVIDCFEKAVLPSITDQEQRSILHFVVVGGGPTGVEFAAELHDYVLEDLIKLYPTVKDKVKITVIQSGDHILNMFDDRISSFAEQKFTRDGIEVQTGCRVIGVDDKVITMKEKSTGEVCSVPHGLVVWSTGISTLPVIRDFMKEIGQAERHVLATNEWLRVKGCEEVYALGDCSSITQRKIMDDITAIFEAADKNKSGTLTIEEFQEVVDDIVLRYPQVEHYLKQKHLRDFSTLWKDLQGNESKEIGIEAFKLALCHADSQVKSLPATAQVAAQQGAYLARCFNHMDHAEENPEGPRRFSGSGRHKFLPFRYRHLGQFAPLGGEQTAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00842 573 SMART efh_1 378 406 IPR002048 GO:0005509
Vian5g00842 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Vian5g00842 573 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Vian5g00842 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Vian5g00842 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 403 - -
Vian5g00842 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 572 - -
Vian5g00842 573 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Vian5g00842 573 SUPERFAMILY EF-hand 367 455 IPR011992 -
Vian5g00842 573 PANTHER NADH DEHYDROGENASE 48 573 IPR045024 GO:0003954|GO:0006116
Vian5g00842 573 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Vian5g00842 573 Gene3D - 43 429 - -
Vian5g00842 573 Gene3D - 441 573 - -
Vian5g00842 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Vian5g00842 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Vian5g00842 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00842 Vian-Chr5 28753103 28759736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00842 5 573 Chloroplast and Mitochondria Gene Families AT4G21490 64.360 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00842 K03885 - gmx:100793566 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00842 5 28753103 28759736 Vian5g00842 5 28753103 28759736 ECH