Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00828 ATGGATTGGAAGAGATCTGCTTCGGAGTGCCAGAGAGTAAAGATCTGTGGACAAGTTCTGTTGGGATTTTTGTTGATCTGCATAATTCACACTTCAAGTGCCGTCACCGATCCCACTGATGTTGCTGCAATTAATAGCTTCTATGTTGCACTGGGATCCCCTGTCCTTCCTGGGTGGGTTGCTAGTGGAGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTTCTTGTAATGGGTCATTCATACAAAAAATAGTTCTAAATGGTGCAAATTTGGGAGGAGAACTGGGAGATAAACTGTCAACTTTTGTTTCAATCTCAGTAATTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCTAGTTTGCCAGTTACCATGAAAAACTTTTTTCTTTCAGCCAACCAGTTTACTGGAAGTATTCCAACCTCTTTATCCACTCTGGCTGGACTGACAGACATGTCTCTTAACAACAATTTCTTAACTGGAGAATTACCGGATGCTTTTCAGTCACTTACGCAATTGATCAATCTTGATTTATCGCATAATAATTTGAGTGGAGCATTGCCTTCTTCTATGGATAACTTGTCATCTCTGACCACCCTACGCTTACAAAACAACCAATTGTCTGGGACACTTGATGTCTTACAAGACCTTCCTCTGAAAGATTTGAATATTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTGAGCATCCCAACCTTCAGGCAAGCTGGAAACCCATTTAATGTTAATGGTACAACACCTCCAGCTTCTTCACCTCGCTCCCCATCAATAACACCACCAGGAACTCCCATTTCTGGGGCACCACCGGGAACTCCCACCTCTGGGTCACCACCATCTTCGGGCCGTGTACCTACTAAACAGGCCGATGGACCAGCTGCAGCAAATGAATCGCACACTGGGAAATCCAAAAATTCCACAAAAAGGGTGGTTTGGATATCTATTGGTAGTGTGTTAGGATTCATTATTTTGTTACTAGGATTCATTCTCTTTATTCCAAGATGCAGCAGAAGAGAACGGGATGGCAGAAGGTCCAAGCATCAAATTGGTGCGTATGGGGCTGAAAGGGAAATGACCAGGGATAACGGGAGTTCAGTCCAACCACCTAGTCAAATGGAAAAAGGGGATGTTCCAAGGCCAAAAGAGGACCATCAGGCAGAGAATAGGACAGCCTGGGCTAATCCAAGGCAAAACGAAGGTCGTCAGGCAGAGATCAGGACCGTCTCAGCTATTCCAAATGCACATCCAAATCCACGGAGTAAGCAAGAGAATGATGTGCAAAGAATGGCAACAATACCAAAGCCAAGAGATCATGAGATAGATATTAGTACACTAGAAGTATATTCAATGCCTCCTCCCCCTCCACCCCCACCACCTCCTCCACCCCCACCTCCACCTCCACCTACTACTGAGAAGGTGACTGTTGAGCCAACCACATCCCGCAGAGCAACTAACGTCACTACGCACAAAAAGAGTTCAGTTCCTCCTACTTTTGCAAAGTTTTTTGGTATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTTGGTAATGTGTATAGAGCCGAGCTTCCTAATGGCAAGTTTCTTGCTGTAAAGAAACTGGACAAGAGAGCTTCGGATAACCAGAATGATGATGAATTTCTTGAATTGATCAATAGTATTGACAGAATAAGGCATGCAAATGTTGTTGAGCTTGTTGGATACTGTTCCGAGCATGGTCAGAGGCTTCTTATATTTGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCAGACGATGACTTCAAAACCACACTCTCATGGATTACTAGAATTCGAATAGCTCTTGGGGCAGCCAGAGCCTTAGAATATCTGCATGAGCTATGTCAGCCACCTGTAGTACATAGAAATTTGAAGTCTGCCAATATTCTGCTTGATGATGATCTATCCGTGCGGGTCTCTGATTGTGGTTTAGCTCCATTAATAGCTTCAGGATCAGTCAGTCAGCTCTCGGGGAACCTGTTAACTGCTTATGGATATGGAGCTCCTGAATTTGAGTCTGGCATATACACATACCAAAGTGATGTGTACAGCTTCGGAGTGATCATGTTAGAACTTTTGACTGGCCGTCAGTCCCACGACAGGACACGTCCTCGGGGTGAGCAGCTTCTGGCCAGATGGGCAGTTCCCCAACTTCATGATATTGAAGCCTTATCGAACATGGTTGACCCTGCTTTGAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACATTATCTCTAGATGCCTTCAGTCCGAGCCAGAATTTAGGCCAGCAATGTCCGAGGTTGTCTTATACTTACTAAATATGATAAAGAAGGAGTCTCAGCTAGGTGAATCAAATGAAAAATGA 2448 0.4408 MDWKRSASECQRVKICGQVLLGFLLICIIHTSSAVTDPTDVAAINSFYVALGSPVLPGWVASGGDPCGEGWQGISCNGSFIQKIVLNGANLGGELGDKLSTFVSISVIDLSNNNIGGNIPSSLPVTMKNFFLSANQFTGSIPTSLSTLAGLTDMSLNNNFLTGELPDAFQSLTQLINLDLSHNNLSGALPSSMDNLSSLTTLRLQNNQLSGTLDVLQDLPLKDLNIENNQFAGPIPPKLLSIPTFRQAGNPFNVNGTTPPASSPRSPSITPPGTPISGAPPGTPTSGSPPSSGRVPTKQADGPAAANESHTGKSKNSTKRVVWISIGSVLGFIILLLGFILFIPRCSRRERDGRRSKHQIGAYGAEREMTRDNGSSVQPPSQMEKGDVPRPKEDHQAENRTAWANPRQNEGRQAEIRTVSAIPNAHPNPRSKQENDVQRMATIPKPRDHEIDISTLEVYSMPPPPPPPPPPPPPPPPPPTTEKVTVEPTTSRRATNVTTHKKSSVPPTFAKFFGIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKFLAVKKLDKRASDNQNDDEFLELINSIDRIRHANVVELVGYCSEHGQRLLIFEYCSNGSLYDALHSDDDFKTTLSWITRIRIALGAARALEYLHELCQPPVVHRNLKSANILLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSHDRTRPRGEQLLARWAVPQLHDIEALSNMVDPALNGNYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMIKKESQLGESNEK 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00828 815 MobiDBLite consensus disorder prediction 424 438 - -
Vian5g00828 815 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Vian5g00828 815 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 83 796 - -
Vian5g00828 815 MobiDBLite consensus disorder prediction 401 415 - -
Vian5g00828 815 MobiDBLite consensus disorder prediction 459 483 - -
Vian5g00828 815 MobiDBLite consensus disorder prediction 250 318 - -
Vian5g00828 815 Pfam Protein tyrosine and serine/threonine kinase 528 797 IPR001245 GO:0004672|GO:0006468
Vian5g00828 815 MobiDBLite consensus disorder prediction 484 504 - -
Vian5g00828 815 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515
Vian5g00828 815 MobiDBLite consensus disorder prediction 386 400 - -
Vian5g00828 815 MobiDBLite consensus disorder prediction 349 438 - -
Vian5g00828 815 MobiDBLite consensus disorder prediction 457 504 - -
Vian5g00828 815 SUPERFAMILY Protein kinase-like (PK-like) 501 799 IPR011009 -
Vian5g00828 815 SUPERFAMILY L domain-like 37 243 - -
Vian5g00828 815 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 603 813 - -
Vian5g00828 815 Gene3D Phosphorylase Kinase; domain 1 484 602 - -
Vian5g00828 815 MobiDBLite consensus disorder prediction 349 365 - -
Vian5g00828 815 ProSiteProfiles Protein kinase domain profile. 525 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00828 815 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 490 602 - -
Vian5g00828 815 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
Vian5g00828 815 SUPERFAMILY Formin homology 2 domain (FH2 domain) 468 474 - -
Vian5g00828 815 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Vian5g00828 815 MobiDBLite consensus disorder prediction 264 287 - -
Vian5g00828 815 Gene3D Ribonuclease Inhibitor 38 260 IPR032675 -
Vian5g00828 815 Gene3D Transferase(Phosphotransferase) domain 1 603 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00828 Vian-Chr5 28577929 28583876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00828 26 806 Strubbelig Receptor Gene Family AT4G03390 59.899 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vian5g00828 PK_Tyr_Ser-Thr 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00828 - - mtr:25492087 1097.42