LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00816	ATGGCGAGTAACAGTGGAAAGTCCGGCAAAGAGGGTGTTGAAGAGACCCATCATCACGTAGTGTTTGGTGAAAGTGAAGGCCGGGATTCGGAGAAAGAGAAGGGAAAGTGTGTGGATTTGAGCTCAGGGAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCTATCTCACAAAGGCCTCTCAAGAAAATCCGCAGCCCCGAACACCAAAGCCCCAATCAGCAACCTTCTTCATCATCTTCCTCTATGCTCTCTCTCCAACCTCCTTCATCGAGAATAGTGTTTCCTTTCGCTTTTGAAGGCAATCAACACCCAATGCCATCATTCCCACACTCATTCGGAACCACAAACTTGCCTCTTTTTCGTCCCCCTCTTCAGCCAACGCAACAAATGATATCGTTTGGGTCCCAACAGAACATGGGGTATCCACAATTCCTTTGCCCGGATTCCACCGTACCAAACCAACAACAGCTCCAGCAGCAGCAGCAGCAGCAACAACAGCAGTATCAGTATCAGCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCACTCAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCTCAAGCTCAGCCTTTGAATGCCACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCCATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGCTCCTGCTTCTTCCTCCAACGAAGGTTCAACATCAACATCAAGCCAGAACACTAAGCAACCTGAGCCAGTACCAGAAGAGACCAACACTGAGAGCGAGGACATGCCACCAACTGAGACATTAGCAGAAGAGAATGCTGAAACTGAGGAAGGAGTTTCACAGCCTCAGGAACTGGTCTGGGGAGAGTGGTTCAATACAATTCCTGCAGGTTGGGGTCCTGGGAGTCCCGTGTGGGATGATTTGGATCACAACAATCTTCTTCTGCATTCACAACTTCCCTTTGTGAATCAATCCCATCAAGAGTTCCATCATGATGCCGCTGGTGCTTCTTCTCAGACACAACAAGATAACAACAACGCAGGACCAGGTTCTTCCTCTCCCTCTTGTTCCATGAGGCCCTTCTTCTGA	1287	0.488	MASNSGKSGKEGVEETHHHVVFGESEGRDSEKEKGKCVDLSSGRRQWKPVFDDASISQRPLKKIRSPEHQSPNQQPSSSSSSMLSLQPPSSRIVFPFAFEGNQHPMPSFPHSFGTTNLPLFRPPLQPTQQMISFGSQQNMGYPQFLCPDSTVPNQQQLQQQQQQQQQQYQYQQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPAPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTETLAEENAETEEGVSQPQELVWGEWFNTIPAGWGPGSPVWDDLDHNNLLLHSQLPFVNQSHQEFHHDAAGASSQTQQDNNNAGPGSSSPSCSMRPFF	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	67	87	-	-
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	291	318	-	-
	Vian5g00816	428	Gene3D	AP2/ERF domain	222	280	IPR036955	GO:0003700\|GO:0006355
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	320	339	-	-
	Vian5g00816	428	ProSiteProfiles	AP2/ERF domain profile.	222	279	IPR001471	GO:0003700\|GO:0006355
	Vian5g00816	428	SMART	rav1_2	222	285	IPR001471	GO:0003700\|GO:0006355
	Vian5g00816	428	PRINTS	Ethylene responsive element binding protein signature	223	234	IPR001471	GO:0003700\|GO:0006355
	Vian5g00816	428	PRINTS	Ethylene responsive element binding protein signature	245	261	IPR001471	GO:0003700\|GO:0006355
	Vian5g00816	428	FunFam	Ethylene-responsive transcription factor 2	221	280	-	-
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	10	41	-	-
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	391	428	-	-
	Vian5g00816	428	Coils	Coil	155	175	-	-
	Vian5g00816	428	SUPERFAMILY	DNA-binding domain	222	280	IPR016177	GO:0003677
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	286	348	-	-
	Vian5g00816	428	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	31	374	-	-
	Vian5g00816	428	CDD	AP2	221	281	IPR001471	GO:0003700\|GO:0006355
	Vian5g00816	428	MobiDBLite	consensus disorder prediction	1	87	-	-
	Vian5g00816	428	Pfam	AP2 domain	223	271	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00816	Vian-Chr5	28137456	28138742	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00816	34	375	AP2-EREBP Transcription Factor Family	AT4G28140	43.266	2.12e-62	202

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vian5g00816		AP2	2.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00816	-		-	gmx:100811328	596.275