Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00808 ATGGGTGCTCTTCAGTCTACACTTCTCTACTTGATTTTACTACACTCATGCAAGATTTTTGCTTACAAGGACCAACAATGGAAGAAAGCCACTGCCACTTTTGCCAAAGACTCAGAGGGGTCTCTTGTCACCGAAGGAGCTTGTGGTTATGGAGATCTCCACAAGGAAAGTTATGGAAAACACAGTGCTGGCTTAAGCACCATGTTGTTCAACAGAGGGAGCATATGTGGGGCCTGCTATGAAATCAGATGTGTTGACCACATCTTGTGGTGTGTGATGGGAAGCCCTTCTGTAGTTGTTACTGTAACAGATTTCTGTGCTCCAAATTACGGCCTTTCAGTTGATTATGGTGGCTGGTGCAATTTTCCGAGGGAACATTTTGAGATGTCAAAGACAGCATTTGCTGAAATTGCCAAGAACAAAGCTGATATAGTGCCAGTTCAGTATAGAAGAGTAAAGTGTGAAAGAAGTGGTGGCATGAGATTCACAATGAGTGGGGGTTCTCACTTCTATCAGGTGCTGATTTCCAATGTTGGTGTGGATGGTGAAGTGATTGCTGTGAAAGTGAAGGGGTCTAGAACAGGGTGGATACCAATGGCTAGGAACTGGGGACAGAACTGGCATTGCAATGCCAACTTTCAAAACCAGCCTCTGTCCTTTGAGAATCTTCTCTTCAGACCTGAAACCATGGCGGTTCGGTTCTTCCAGAACCCGATGCCCGAATTCGTACCCGAAGCGACGCCGTCTACTCCGCAGGAGCAAGAAGAAGCGCTCACAGTAGGGGACTCACTCACGAAGCTCCTGGCCATGCCCTACGCGCCACTCTCGGAGCGTCTCAAGCGCGCTGCTCTAGACCTCAAAGAAACGATAGTGATAGAAACGTGGGGAGTATCTGGGCAAAAAGATGGAGACTTTACTCTCTACTGCGGCGTTCTGGGCACGGCTTTTCTGCTCTTGAAGTCTTACGAAGTGACACGCAACGGGAACGATCTTTCTCTTTGCTCTCAGATTGTGAAGGCTTGCGATGCCGCTTCCCTTGGTTCCAGGGATGTGACCTTTATTTGTGGGCGTGCTGGCGTGTGCTCTCTCGGTGCCGTTGTTGCAAAACACGCCGGCGATGATGAGTCCTTGAGGTACTACTTGGCTCAGTTCGAAAAGATTAAGCTACCAAAAGATCTTCCTGACGAGTTGTTATATGGGAGAGTTGGTTTTCTGTGGGCCTGTTTGTTCCTAAACAAGCACCTTGGTCAGGGGACAGTTCCTTCCAGCTATACAGCTATGGTTGTTGATGAAGTCATTAAAAGTGGAAGGAGGATGGGTAGAAAGGGAAGGTGCCCATTGATGTATGAATGGTATGGGGAGAAGTATTGGGGTGCTGCGCATGGATTGGCTGGGATTATGCATGTGCTGATGGATATGGAGTTGAAGCCAGATGAAGTTGAGGACGTTAAGGGAACTCTGAAATACATGATAAGCAATAAATTTTCCAGTGGAAACTATCCCGCTAGTGAAGATGATAGGAAGAGCGATGTTCTTGTGCATTGGTGTCATGGAGCTCCAGGGATAGCCCTTACACTTGTCAAAGCAGCTAAGGTTTTTGGAGATAAAGAATTCTTGGATGCAGCTATGGAAGCAGGAGAGGTGGTTTGGAATCGTGGTCTGCTGAAGAAAGTTGGGATATGCCATGGCATAAGTGGGAATGCATATGTGTTTCTGTCACTGTACCAACTTACAAGGGATGTGAAGCATCTATATAGAGCCAAGGCTTTTGCTTGCTTTTTGCTTGACAGAGCTCATAAGCTGATATCTGGAGGTGAAATGCATGGAGGTGATAGACCATATTCATTGTTTGAAGGGAAAGGAGGCATGGCTTATCTTTTCTTGGATATGATCGATCCTTCCCAGTCTAAATTTCCAGCGTATGAGCTCTGA 1932 0.4679 MGALQSTLLYLILLHSCKIFAYKDQQWKKATATFAKDSEGSLVTEGACGYGDLHKESYGKHSAGLSTMLFNRGSICGACYEIRCVDHILWCVMGSPSVVVTVTDFCAPNYGLSVDYGGWCNFPREHFEMSKTAFAEIAKNKADIVPVQYRRVKCERSGGMRFTMSGGSHFYQVLISNVGVDGEVIAVKVKGSRTGWIPMARNWGQNWHCNANFQNQPLSFENLLFRPETMAVRFFQNPMPEFVPEATPSTPQEQEEALTVGDSLTKLLAMPYAPLSERLKRAALDLKETIVIETWGVSGQKDGDFTLYCGVLGTAFLLLKSYEVTRNGNDLSLCSQIVKACDAASLGSRDVTFICGRAGVCSLGAVVAKHAGDDESLRYYLAQFEKIKLPKDLPDELLYGRVGFLWACLFLNKHLGQGTVPSSYTAMVVDEVIKSGRRMGRKGRCPLMYEWYGEKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLKYMISNKFSSGNYPASEDDRKSDVLVHWCHGAPGIALTLVKAAKVFGDKEFLDAAMEAGEVVWNRGLLKKVGICHGISGNAYVFLSLYQLTRDVKHLYRAKAFACFLLDRAHKLISGGEMHGGDRPYSLFEGKGGMAYLFLDMIDPSQSKFPAYEL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00808 643 CDD euk_LANCL 307 639 - -
Vian5g00808 643 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Vian5g00808 643 Pfam Lytic transglycolase 63 149 IPR009009 -
Vian5g00808 643 Pfam Expansin C-terminal domain 160 221 IPR007117 -
Vian5g00808 643 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 240 IPR007117 -
Vian5g00808 643 SUPERFAMILY LanC-like 301 643 - -
Vian5g00808 643 PANTHER LANC-LIKE PROTEIN 230 643 - -
Vian5g00808 643 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Vian5g00808 643 FunFam LanC-like protein 2 230 643 - -
Vian5g00808 643 CDD DPBB_EXPA_N 26 154 - -
Vian5g00808 643 Gene3D - 227 643 IPR012341 GO:0005975
Vian5g00808 643 SMART dpbb_1 62 149 IPR007112 -
Vian5g00808 643 Pfam Lanthionine synthetase C-like protein 304 643 IPR007822 GO:0031179
Vian5g00808 643 SMART LANC_like_2 301 643 IPR007822 GO:0031179
Vian5g00808 643 PRINTS Eukaryotic LanC-like protein family signature 491 506 IPR020464 -
Vian5g00808 643 PRINTS Eukaryotic LanC-like protein family signature 231 244 IPR020464 -
Vian5g00808 643 PRINTS Eukaryotic LanC-like protein family signature 529 550 IPR020464 -
Vian5g00808 643 PRINTS Eukaryotic LanC-like protein family signature 445 457 IPR020464 -
Vian5g00808 643 PRINTS Eukaryotic LanC-like protein family signature 574 592 IPR020464 -
Vian5g00808 643 PRINTS LanC-like protein superfamily signature 512 532 IPR007822 GO:0031179
Vian5g00808 643 PRINTS LanC-like protein superfamily signature 558 571 IPR007822 GO:0031179
Vian5g00808 643 PRINTS LanC-like protein superfamily signature 395 410 IPR007822 GO:0031179
Vian5g00808 643 PRINTS LanC-like protein superfamily signature 613 630 IPR007822 GO:0031179
Vian5g00808 643 PRINTS LanC-like protein superfamily signature 456 472 IPR007822 GO:0031179
Vian5g00808 643 PRINTS LanC-like protein superfamily signature 304 322 IPR007822 GO:0031179
Vian5g00808 643 Gene3D - 14 155 IPR036908 -
Vian5g00808 643 SUPERFAMILY PHL pollen allergen 156 224 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00808 Vian-Chr5 28016049 28020068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00808 9 242 Expansin Gene Family AT4G38210 59.916 8.64e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00808 - - gmx:100803464 761.525