Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00796 ATGATATCTTACAATATCAATATTAATTATTGGCATTTTGCTTTAGCTATTGTTGTTGTTGTCTTCATTCCAAACCTCAGTGTTGCAAAACAATCTAAAATAGATGGATTGAAAATGAATGTGATTGATCAATGTTGGAGATTAAATCCTGAATGGAGGATGAATCGACCTCAATTAGCAACATGTTCTATTGGCTACACTGGTAAGATGACAAACAACACTGGGAAAGACCTCATCCATTATAAAGTTATTGACCCTAGTGATGATCCTATAAGTCCTAAACCTGGTACCTTGAGATATGGAGCTTCTGTAATTCAAAGTAAAGTGTGGATCACATTCCAAAAAGACATGCATATTAAACTTGAAAAACCCCTTCTTATTAGTAGTTTTACAACCATTGATGGTCGAGGCATTAATGTTGACATTGCTGAAAATGCATGTTTAATGATCTTTAAGGCCACAAATGTAATCATCCATAACATTCGACTTCATCATTGCAAACCTCAAGCTCCAGGGGTTGTGATGGGACCAGAAGGAAAGGTGATTCCTTTAGGCCATGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATAATTGTCAAGATGGCTTACTAGATGTAACACGGGGTTCAACTGATGTGACTATATCTAATAATTGGTTTAGAAACCAAGACAAAGTCATGCTTCTTGGACATGATGATGGTTATATAAGAGATCAAAACATGAAGGTTACTCTTGTATACAACCACTTTGGACCTAATTGTAATCAACGCATGCCCAGGATTCGTCATGGGTATGCACATGTAGTCAATAATCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGTATGAGACCTAGTCTCAAAAGTGAAGCTAATCTCTTTATAGCACCAACAAAAGGGAGTAAAGAGGTAACATGGAGAAAAAATAGCCAAGGAAATGGAGATGCATGGAAGTTTTATTCACTGAAAGACGCATTTGAGAATGGAGCTTCTTTCACAATGACAAAAGGAGGACACGTGCCAAAACCAAACTATAATGAAGAACAACGTTTTAGTGTTGTTAATGTCAAATATGTAACATGGAGAAAAAATAGCCACGAAAATGGAGATGCATAG 1155 0.3628 MISYNININYWHFALAIVVVVFIPNLSVAKQSKIDGLKMNVIDQCWRLNPEWRMNRPQLATCSIGYTGKMTNNTGKDLIHYKVIDPSDDPISPKPGTLRYGASVIQSKVWITFQKDMHIKLEKPLLISSFTTIDGRGINVDIAENACLMIFKATNVIIHNIRLHHCKPQAPGVVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTLVYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWVQYAIGGSMRPSLKSEANLFIAPTKGSKEVTWRKNSQGNGDAWKFYSLKDAFENGASFTMTKGGHVPKPNYNEEQRFSVVNVKYVTWRKNSHENGDA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00796 384 Gene3D - 39 381 IPR012334 -
Vian5g00796 384 SUPERFAMILY Pectin lyase-like 39 349 IPR011050 -
Vian5g00796 384 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Vian5g00796 384 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Vian5g00796 384 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Vian5g00796 384 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Vian5g00796 384 PRINTS Pollen allergen Amb family signature 330 354 IPR018082 -
Vian5g00796 384 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Vian5g00796 384 SMART amb_all 116 313 IPR002022 -
Vian5g00796 384 PANTHER PECTATE LYASE 18-RELATED 37 374 IPR045032 GO:0030570
Vian5g00796 384 Pfam Pectate lyase 127 307 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00796 Vian-Chr5 27790071 27791757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00796 70 317 Polysaccharide Lyase AT5G09280 70.161 2.17e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00796 K01728 - gmx:100780437 664.455