Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00795 ATGGATCATCTTGGAATTCAACCCCCTTCAACCAAGGTTGAAAGAAGGCTCGTTGAGAAGAACAGAAGAAACCAGATGAAGATCCTCTTCAACAAACTCAATTCTCTTCTCCCTAGCTACAACCCCAAGGAAGTATTACCACTGCCTGATCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCGAAGGTGAAGATGGCACAAGAGAAGAAAGAGAGCTTGCAGGGTGCTAAGAAAAGATACCGTGGTTGCTTCTCCAATAATAACGGTGCTAATTTAGATGCAGCACCACTCCCAAAATCTCCACAACTTGAGATTCAAGAAGTGGGTTCCTCCCTACAAGTTGTTCTGACTACAGGGATGGATAACCAGTTCATATTCTATGAAATCATTCGAATGCTGCATGAAGAGAACATAGATGTTAGAAGTCTCAATTCCTCACTCACTGGAGACTCGGTGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTCGGAGCCGCCAAAGTAAGTGAGAGGTTGAAAAGGTTTGTAAATGGATCATACAGTGACGTGGAAACACAACACGAGTGGTGGGATTTTGATATTGGCAGTGATGATATCTGGGGTTTCTAG 630 0.4317 MDHLGIQPPSTKVERRLVEKNRRNQMKILFNKLNSLLPSYNPKEVLPLPDQVDEAINYIKSLEAKVKMAQEKKESLQGAKKRYRGCFSNNNGANLDAAPLPKSPQLEIQEVGSSLQVVLTTGMDNQFIFYEIIRMLHEENIDVRSLNSSLTGDSVLHVVHAEIPQSFLQFGAAKVSERLKRFVNGSYSDVETQHEWWDFDIGSDDIWGF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00795 209 Gene3D - 7 89 IPR036638 GO:0046983
Vian5g00795 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 183 - -
Vian5g00795 209 Coils Coil 52 79 - -
Vian5g00795 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 82 IPR036638 GO:0046983
Vian5g00795 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Vian5g00795 209 FunFam Transcription factor bHLH162 4 88 - -
Vian5g00795 209 SMART finulus 16 68 IPR011598 GO:0046983
Vian5g00795 209 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00795 Vian-Chr5 27783141 27784120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00795 10 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.912 3.43e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g00795 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00795 - - vun:114170573 381.333